Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ITG12_RS12980 Genome accession   NZ_CP080238
Coordinates   2798069..2798713 (-) Length   214 a.a.
NCBI ID   WP_038864583.1    Uniprot ID   A0A2N7N206
Organism   Vibrio sp. ED002     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2799649..2800852 2798069..2798713 flank 936


Gene organization within MGE regions


Location: 2798069..2800852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS12980 (ITG12_12900) qstR 2798069..2798713 (-) 645 WP_038864583.1 LuxR C-terminal-related transcriptional regulator Regulator
  ITG12_RS12985 (ITG12_12905) ssb 2798994..2799536 (+) 543 WP_038864580.1 single-stranded DNA-binding protein Machinery gene
  ITG12_RS12990 (ITG12_12910) - 2799649..2800852 (+) 1204 WP_248873087.1 IS3 family transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24563.45 Da        Isoelectric Point: 9.2290

>NTDB_id=591576 ITG12_RS12980 WP_038864583.1 2798069..2798713(-) (qstR) [Vibrio sp. ED002]
MKKSAYARKLFLISMEDHAEKKVEDLVKYTDIDIPVISTEALMEANPKHRNKILMIDFSEHKSLVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGVFYQESSLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=591576 ITG12_RS12980 WP_038864583.1 2798069..2798713(-) (qstR) [Vibrio sp. ED002]
GTGAAAAAATCGGCTTATGCGAGAAAACTGTTTCTGATCAGCATGGAAGACCATGCAGAGAAAAAAGTTGAAGACTTGGT
CAAATACACTGACATTGATATTCCAGTGATCTCCACCGAAGCGCTTATGGAAGCCAATCCCAAACATCGTAATAAGATCT
TAATGATCGATTTCAGTGAGCACAAATCCTTGGTTCAGTCGATTAAGAACCTTCCGTTAATATGGAAAAACTTTGAGACC
GTCGTATTTAACGTCCCTAAGCGTTTAACCACAGATGAACTATTAGCGTTTGGTCAATTAAAGGGAGTCTTCTACCAAGA
GAGCTCACTTGAGCAAATCGGAGAAGGGCTAAAAGGCATCGTAAACGGCCAAAATTGGTTGCCACGAAACGTAACCAGCC
AACTTTTACATTACTATCGCAACGTCATAAACACACATACTGCGCCCGCTACTGTCGATTTGACTATTCGTGAACTGCAA
GTATTACGCTGCCTTCAAGCAGGTGCATCAAATAATCAAATGGCTGAGGAGTTGTTTGTTAGCGAATTCACCATCAAGTC
TCACTTGTATCAGATTTTCAAAAAACTGTCGGTTAAAAATCGCGTGCAAGCCATCGCTTGGGCTGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N206

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

93.458

100

0.935
  qstR Vibrio parahaemolyticus RIMD 2210633

90.654

100

0.907
  qstR Vibrio cholerae strain A1552

51.402

100

0.514