Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ITG12_RS12540 Genome accession   NZ_CP080238
Coordinates   2698768..2699400 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. ED002     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2693768..2704400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS12525 (ITG12_12445) astA 2694980..2695999 (+) 1020 WP_038871998.1 arginine N-succinyltransferase -
  ITG12_RS12530 (ITG12_12450) astD 2696028..2697485 (+) 1458 WP_248873112.1 succinylglutamate-semialdehyde dehydrogenase -
  ITG12_RS12535 (ITG12_12455) - 2697749..2698540 (+) 792 WP_038877272.1 DUF1338 domain-containing protein -
  ITG12_RS12540 (ITG12_12460) crp 2698768..2699400 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  ITG12_RS12545 (ITG12_12465) - 2699640..2700509 (-) 870 WP_005432770.1 phosphoribulokinase -
  ITG12_RS12550 (ITG12_12470) - 2700634..2700846 (-) 213 WP_038877274.1 YheU family protein -
  ITG12_RS12555 (ITG12_12475) - 2700912..2701919 (-) 1008 WP_038871988.1 hydrolase -
  ITG12_RS12560 (ITG12_12480) - 2702020..2702499 (-) 480 WP_038871985.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=591570 ITG12_RS12540 WP_005381432.1 2698768..2699400(-) (crp) [Vibrio sp. ED002]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=591570 ITG12_RS12540 WP_005381432.1 2698768..2699400(-) (crp) [Vibrio sp. ED002]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAGGGCGACTTCATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGCCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471