Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ITG12_RS06070 Genome accession   NZ_CP080238
Coordinates   1307550..1309808 (-) Length   752 a.a.
NCBI ID   WP_248873839.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302550..1314808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS06050 (ITG12_05970) kdsB 1303842..1304597 (-) 756 WP_038866685.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ITG12_RS06055 (ITG12_05975) - 1304597..1304776 (-) 180 WP_005378451.1 Trm112 family protein -
  ITG12_RS06060 (ITG12_05980) lpxK 1304757..1305764 (-) 1008 WP_248873838.1 tetraacyldisaccharide 4'-kinase -
  ITG12_RS06065 (ITG12_05985) msbA 1305770..1307518 (-) 1749 WP_038866683.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ITG12_RS06070 (ITG12_05990) comEC 1307550..1309808 (-) 2259 WP_248873839.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ITG12_RS06075 (ITG12_05995) - 1309817..1310326 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ITG12_RS06080 (ITG12_06000) lolE 1310526..1311770 (-) 1245 WP_038866676.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ITG12_RS06085 (ITG12_06005) lolD 1311773..1312480 (-) 708 WP_038875924.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ITG12_RS06090 (ITG12_06010) lolC 1312473..1313681 (-) 1209 WP_248873840.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ITG12_RS06095 (ITG12_06015) - 1313933..1314502 (+) 570 WP_038866671.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84135.20 Da        Isoelectric Point: 9.1238

>NTDB_id=591557 ITG12_RS06070 WP_248873839.1 1307550..1309808(-) (comEC) [Vibrio sp. ED002]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIIAIGSIIKLRRGLISIGVISGCMVVIVHGNVMEHQRQALFQAGV
NITIIGKVDSPFTQISHGYEGIAVVRGVNSQNLLPFLKPKIRLITPFPLPVNSDFTTQVSLKPILGLRNEAGFDSEQQAI
GQGIVARATSSRNAKWQIRSSYSVRQQIIQSVSGSISRLKHYPLINALAFSDRSLLTYQDWQLLRDSGLLHLVSISGLHI
GMAFSFGIFAGVALRYIFFNLQLLPPFIGIITAFLYAWLADFSLPTIRAFSVCVIYVSLKFWLVYWSAWRVLLLAVAIQL
CIEPFASLSLSFWLSYLSVVAVLLAVNAVQSHKGDWKDKLILLLKVQLVLTLLIVPISGYFFSGTSLTSIIYNLVFIPWF
GMIVVPLMFLALMFSLCSYFISAWFWQGMDWALWPLSWSLPFATGSWQFLSLKATLLVGVASACLLLGRFFRANGLLLLL
LVTTCVVFFHDSTRDRWRVDVLDVGHGLAVLIEKGGKVLLYDTGKGWGSGSIAEQVIAPTLHRRGYGSIDGVIISHADSD
HAGGRQYIESAFNPTNKFSSQNYTDYKACVAGEYWSWQSLNMEVLWPPKLVQRAYNPHSCVIRVVDSQSGFRLLLTGDIE
AISEWILMREPEKLESDVMLVPHHGSKSSSNPKFVQAVSPKLAIASLAKSNQWGMPAENVVSAYEESKALWLDTGSDGQV
SVFIEQDNWHFEVKRSETFDPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=591557 ITG12_RS06070 WP_248873839.1 1307550..1309808(-) (comEC) [Vibrio sp. ED002]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCATTATTTGTCGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATGCC
AGATTGGCGATGGTTGCTGCTGGGAATAATTGCCATTGGCTCAATAATCAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTTCGGGCTGTATGGTTGTTATTGTCCACGGCAATGTTATGGAACATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGGTGGTTCGCGG
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGTCTGATAACCCCTTTCCCACTGCCTGTTAACAGTG
ACTTTACTACTCAAGTTTCACTTAAACCCATTCTAGGGTTGAGAAATGAAGCGGGTTTTGATTCTGAGCAACAAGCCATT
GGGCAGGGAATTGTTGCAAGGGCAACGTCGTCACGTAATGCCAAGTGGCAGATTCGTTCTTCGTACTCTGTTCGTCAGCA
AATCATTCAGTCGGTTTCTGGAAGCATCTCGCGCCTCAAACATTATCCACTCATCAATGCGCTCGCCTTTAGTGACCGCT
CACTTTTAACGTATCAAGATTGGCAGCTGCTACGGGATAGTGGGTTATTGCACCTTGTCTCTATTTCCGGTTTGCATATT
GGGATGGCATTCAGTTTTGGTATTTTCGCCGGGGTTGCGCTTCGGTATATTTTTTTCAATCTCCAGCTGTTACCACCTTT
CATTGGGATTATCACTGCGTTTTTGTACGCTTGGCTTGCAGATTTTTCTTTGCCGACGATAAGAGCTTTTTCTGTCTGTG
TTATTTATGTGTCATTAAAGTTTTGGCTGGTGTATTGGAGCGCTTGGCGTGTATTGCTGTTAGCAGTCGCTATTCAGCTT
TGCATTGAACCTTTTGCTTCTCTTAGTCTGAGTTTTTGGTTGTCGTATCTCTCTGTTGTTGCGGTACTGCTTGCGGTGAA
TGCCGTTCAGAGCCACAAGGGGGATTGGAAGGACAAGTTGATCTTGTTGTTGAAAGTACAGTTAGTACTTACTTTGTTGA
TCGTGCCGATCAGTGGGTATTTCTTCTCTGGCACCAGTCTAACCTCAATTATTTATAACCTAGTATTTATACCTTGGTTT
GGGATGATTGTGGTTCCTCTGATGTTTCTTGCACTCATGTTTTCGCTTTGCTCTTATTTCATTTCGGCGTGGTTTTGGCA
AGGCATGGACTGGGCGCTATGGCCATTGAGTTGGTCTTTACCCTTTGCCACAGGGAGTTGGCAGTTTCTCAGTTTAAAAG
CAACGCTTCTTGTCGGTGTGGCAAGTGCTTGTCTTTTGCTTGGTCGCTTTTTTCGGGCGAACGGACTGCTTTTATTACTT
TTGGTCACGACTTGTGTGGTGTTCTTTCATGATTCAACTAGAGACCGATGGCGAGTGGATGTTCTCGATGTTGGGCATGG
GCTTGCAGTATTAATCGAAAAAGGCGGCAAGGTATTGCTTTATGACACAGGTAAAGGATGGGGGAGCGGTAGCATTGCTG
AGCAGGTTATCGCCCCGACTTTACATCGTCGAGGTTACGGTTCCATTGATGGGGTCATCATTAGCCATGCGGACTCTGAC
CATGCAGGAGGTCGTCAATACATCGAAAGTGCTTTCAATCCGACCAATAAGTTCAGCAGCCAGAATTACACTGACTACAA
AGCGTGCGTTGCAGGGGAGTACTGGTCATGGCAATCCTTGAATATGGAAGTGTTGTGGCCACCGAAGTTGGTTCAGCGTG
CCTACAATCCCCACTCTTGTGTGATTAGGGTAGTCGACTCTCAATCTGGTTTCCGTCTGCTGCTGACGGGAGATATTGAA
GCCATAAGTGAATGGATACTCATGCGTGAGCCTGAGAAACTAGAAAGTGATGTGATGTTGGTTCCTCACCATGGCAGCAA
GAGTTCTTCGAACCCCAAATTTGTTCAAGCCGTTTCCCCCAAATTAGCCATTGCTTCTCTCGCAAAAAGTAATCAATGGG
GGATGCCTGCTGAAAATGTTGTATCAGCTTATGAAGAGAGCAAGGCGCTTTGGTTAGACACAGGCAGTGATGGTCAAGTA
TCGGTGTTTATTGAGCAAGACAATTGGCACTTCGAAGTTAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

74.202

100

0.742
  comEC Vibrio parahaemolyticus RIMD 2210633

65.426

100

0.654
  comEC Vibrio cholerae strain A1552

43.501

100

0.436