Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L483_RS06940 Genome accession   NC_021491
Coordinates   1519360..1521573 (+) Length   737 a.a.
NCBI ID   WP_016485474.1    Uniprot ID   -
Organism   Pseudomonas putida H8234     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514360..1526573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L483_RS06920 (L483_06985) - 1516240..1516863 (+) 624 WP_016485470.1 glutathione S-transferase -
  L483_RS06925 (L483_06990) - 1516999..1517931 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  L483_RS06930 (L483_06995) - 1517928..1518707 (+) 780 WP_016485472.1 ABC transporter permease -
  L483_RS06935 (L483_07000) - 1518591..1519217 (-) 627 WP_016485473.1 DUF2062 domain-containing protein -
  L483_RS06940 (L483_07005) comA 1519360..1521573 (+) 2214 WP_016485474.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L483_RS06945 (L483_07010) exbB 1521778..1522413 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L483_RS06950 (L483_07015) - 1522410..1522844 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  L483_RS06955 (L483_07020) lpxK 1522844..1523845 (+) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  L483_RS06960 (L483_07025) - 1523890..1524075 (+) 186 WP_003247142.1 Trm112 family protein -
  L483_RS06965 (L483_07030) kdsB 1524072..1524836 (+) 765 WP_016485478.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L483_RS06970 (L483_07035) - 1524836..1525301 (+) 466 Protein_1373 low molecular weight protein-tyrosine-phosphatase -
  L483_RS06975 (L483_07040) murB 1525298..1526317 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79381.32 Da        Isoelectric Point: 10.2299

>NTDB_id=59150 L483_RS06940 WP_016485474.1 1519360..1521573(+) (comA) [Pseudomonas putida H8234]
MRTGMFALALGLLCPGLFPALPSVGWLITLAACAAVSVFTRVWPLGCFVLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVSGGWRDALRQRLLVVQANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPCACALAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAHQRPAWLAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHYNLLYDAGPARGETDLGERVVLPTLSKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLQPCASGEQWNWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFIRASAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRHG
EVEGIRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=59150 L483_RS06940 WP_016485474.1 1519360..1521573(+) (comA) [Pseudomonas putida H8234]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCCGGGCCTTTTCCCCGCATTGCCATCGGTCGGATGGTT
GATAACGCTGGCTGCCTGCGCGGCCGTCAGCGTGTTTACCCGCGTTTGGCCATTGGGCTGTTTTGTGCTGGGGCTGTGTT
GGGCGTGCTGGTCTGCCCAGCAGGCCCTTGACGATCGCCTGGCTGCCGGCCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTTCCAGCGCGAACTGCGCAGGGCGTGCGCTTCGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAGCTACTGGCGCCGGTAAGCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGGTGGTCCA
AGCCAATGGCCGGCAGGCCGCATTGGTGGCACTGGTGCTGGGTGACGGCGCTGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGTACGGTGCACTTGCTGGTTATTTCTGGCCAGCACATCGGCCTCGTGGCCGGTCTGCTGTACGGCCTG
GTGGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGTGCCTGTGCCCTGGCCATGGCGGC
GGCGTTGGCCTACGGCTGGCTGGCCGGTGCGGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTCGGCGCAATGCTGCCGCTATTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCCTTG
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCGTTTGCCGCAGTGGCCACGCTCATCTACTGCTTCAGCGGCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGTTGCTGGCCACAGGTT
TACCGGTGAGTCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTCAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGGACGTTGCTGCTGCCGCTGGGTGGGGTAGGGGAAGCGTTGCTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGTTGGCGTTGGTGGCGCATCAGCGCCCGGCGTGGCTGGCCCCGGCCTTGCCGTTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCTCGTGGCGTGCCTTTGCGGGGGTTGGGTGGGGTCATGTTGTTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGCCAGGTCGAGGTCTGGCAGCTAGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATTACAACCTGCTGTACGACGCCGGGCCGGCCAGAGGGGAGACCGACCTGGGCGAGCGGGTGGTGCTCCCGA
CCTTGAGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGGTCATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGGCTGCCGGTCAGGCGGCTGATCGGGGGGGAAGCGCTGGATGATGTGCCGTTGCAGCCTTGTGCCAG
TGGCGAACAATGGAACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGACGGGCAGAGCAGCAATGACCGTTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGTGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGCTG
GCAGACACAGAAATGCCGCGTATCGACTGGTTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTAGTGCGCCGCGCGGGGTATTGATTTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTAATGG
AGCGTTATCAGCGGCATGGTCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCATGGG
GAGGTTGAGGGTATCAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.198

98.1

0.581
  comA Ralstonia pseudosolanacearum GMI1000

34.177

100

0.366

Multiple sequence alignment