Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L483_RS06945 Genome accession   NC_021491
Coordinates   1521778..1522413 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida H8234     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516778..1527413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L483_RS06925 (L483_06990) - 1516999..1517931 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  L483_RS06930 (L483_06995) - 1517928..1518707 (+) 780 WP_016485472.1 ABC transporter permease -
  L483_RS06935 (L483_07000) - 1518591..1519217 (-) 627 WP_016485473.1 DUF2062 domain-containing protein -
  L483_RS06940 (L483_07005) comA 1519360..1521573 (+) 2214 WP_016485474.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L483_RS06945 (L483_07010) exbB 1521778..1522413 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L483_RS06950 (L483_07015) - 1522410..1522844 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  L483_RS06955 (L483_07020) lpxK 1522844..1523845 (+) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  L483_RS06960 (L483_07025) - 1523890..1524075 (+) 186 WP_003247142.1 Trm112 family protein -
  L483_RS06965 (L483_07030) kdsB 1524072..1524836 (+) 765 WP_016485478.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L483_RS06970 (L483_07035) - 1524836..1525301 (+) 466 Protein_1373 low molecular weight protein-tyrosine-phosphatase -
  L483_RS06975 (L483_07040) murB 1525298..1526317 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=59151 L483_RS06945 WP_016391244.1 1521778..1522413(+) (exbB) [Pseudomonas putida H8234]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=59151 L483_RS06945 WP_016391244.1 1521778..1522413(+) (exbB) [Pseudomonas putida H8234]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTCGGTCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCTGCTGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAAATGACCGCCAATGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTCATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment