Detailed information
Bioinformatically predicted
Overview
| Name | comFA/cflA | Type | Machinery gene |
| Locus tag | MSA_RS01965 | Genome accession | NC_021486 |
| Coordinates | 339422..340711 (+) | Length | 429 a.a. |
| NCBI ID | WP_016480316.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae ILRI005 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 334422..345711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MSA_RS01945 (MSA_4000) | - | 335729..336397 (+) | 669 | WP_000394891.1 | fructose-6-phosphate aldolase | - |
| MSA_RS01950 (MSA_4010) | - | 336465..337553 (+) | 1089 | WP_016480314.1 | glycerol dehydrogenase | - |
| MSA_RS01955 (MSA_4020) | cysK | 337705..338631 (-) | 927 | WP_000036948.1 | cysteine synthase A | - |
| MSA_RS01960 (MSA_4030) | - | 338722..339366 (-) | 645 | WP_016480315.1 | YigZ family protein | - |
| MSA_RS01965 (MSA_4040) | comFA/cflA | 339422..340711 (+) | 1290 | WP_016480316.1 | DEAD/DEAH box helicase | Machinery gene |
| MSA_RS01970 (MSA_4050) | - | 340711..341376 (+) | 666 | WP_016480317.1 | ComF family protein | - |
| MSA_RS01975 (MSA_4060) | raiA | 341453..342007 (+) | 555 | WP_000599096.1 | ribosome-associated translation inhibitor RaiA | - |
Sequence
Protein
Download Length: 429 a.a. Molecular weight: 48626.48 Da Isoelectric Point: 9.9385
>NTDB_id=59105 MSA_RS01965 WP_016480316.1 339422..340711(+) (comFA/cflA) [Streptococcus agalactiae ILRI005]
MENYLGRLWTKAQLSEQLIKIAISLPSFIKKGSDYICTRCSSSVAKNCQLPTGNYYCRECIVFGRVTSNENLYYFPQKTF
SKTNSLKWKGGLTPYQNEVSEELLKGISSKENLLVHAVTGAGKTEMIYHSIAKVIDTGGSVCIASPRIDVCLELHKRLSN
DFRCAITLMHGESPSYQRSPLTIATTHQLLKFYHAFDLLIVDEVDAFPYVDNPILYHGVKQALKENGTSIFLTATSTTEL
ERKVARKELKKLHLARRFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLFFPHIAEGQVFTEILRQ
AFPMEKIGFVSSKSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEG
LLYFLHDGKSKSMHQAIKEIKNMNHIGGF
MENYLGRLWTKAQLSEQLIKIAISLPSFIKKGSDYICTRCSSSVAKNCQLPTGNYYCRECIVFGRVTSNENLYYFPQKTF
SKTNSLKWKGGLTPYQNEVSEELLKGISSKENLLVHAVTGAGKTEMIYHSIAKVIDTGGSVCIASPRIDVCLELHKRLSN
DFRCAITLMHGESPSYQRSPLTIATTHQLLKFYHAFDLLIVDEVDAFPYVDNPILYHGVKQALKENGTSIFLTATSTTEL
ERKVARKELKKLHLARRFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLFFPHIAEGQVFTEILRQ
AFPMEKIGFVSSKSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEG
LLYFLHDGKSKSMHQAIKEIKNMNHIGGF
Nucleotide
Download Length: 1290 bp
>NTDB_id=59105 MSA_RS01965 WP_016480316.1 339422..340711(+) (comFA/cflA) [Streptococcus agalactiae ILRI005]
ATGGAAAATTATTTAGGTAGGCTTTGGACAAAAGCACAATTATCTGAGCAACTTATAAAAATTGCAATTAGCTTGCCATC
TTTTATAAAGAAAGGAAGCGACTATATTTGTACCCGATGCTCTAGTTCTGTTGCTAAAAATTGCCAATTACCAACTGGAA
ATTATTATTGTAGAGAATGTATAGTTTTTGGAAGAGTTACTAGTAATGAAAATTTATATTATTTCCCACAAAAAACATTT
TCTAAAACGAATTCTTTAAAATGGAAAGGGGGACTGACACCTTATCAAAATGAGGTTTCAGAAGAGTTGTTGAAAGGTAT
TTCAAGTAAGGAAAATCTTCTTGTTCATGCTGTGACAGGGGCTGGTAAAACAGAAATGATATACCACTCTATCGCCAAAG
TAATTGATACTGGAGGAAGCGTTTGTATTGCCAGTCCTAGAATTGATGTTTGTTTAGAATTGCATAAGCGACTTTCAAAC
GATTTTAGATGTGCCATAACATTAATGCATGGAGAATCTCCTTCTTATCAGAGATCCCCTTTAACTATTGCCACAACACA
TCAATTGTTAAAATTTTATCATGCTTTTGATTTGCTAATTGTTGATGAAGTTGATGCTTTTCCATATGTCGACAACCCGA
TACTATACCATGGTGTAAAACAGGCTTTAAAGGAAAACGGAACAAGTATTTTTCTGACTGCAACTTCAACGACTGAGTTA
GAAAGAAAAGTTGCAAGAAAAGAACTAAAAAAATTGCATCTAGCTAGGAGATTTCATGCCAATCCGTTAGTGATACCCGA
GATGGTTTGGGTAAGTGGTATCCAGAAAAGCTTGCAGACACAAAAACTACCTCCCAAATTATATCAGTTGATAAATAAAC
AGCGACAAACGAGATATCCGTTGTTATTATTTTTCCCCCATATTGCAGAAGGTCAGGTATTCACCGAAATTTTAAGACAA
GCCTTTCCTATGGAAAAAATTGGTTTTGTTTCAAGTAAGAGCACATCTAGGTTAAAGTTAGTGCAAGATTTTCGAGATAA
CAAATTGTCTATCCTAGTGTCAACTACCATTCTAGAGAGAGGAGTAACTTTCCCTAGCGTCGACGTTTTTGTTATACAAG
CAAATCATCATTTGTTTACGAAAAGTTCCTTGGTACAAATTTCAGGAAGAGTTGGAAGAGCATTAGAAAGGCCCGAAGGG
CTCCTTTACTTCCTTCATGATGGGAAAAGTAAATCGATGCACCAAGCTATAAAGGAGATTAAAAACATGAATCATATAGG
AGGATTTTAA
ATGGAAAATTATTTAGGTAGGCTTTGGACAAAAGCACAATTATCTGAGCAACTTATAAAAATTGCAATTAGCTTGCCATC
TTTTATAAAGAAAGGAAGCGACTATATTTGTACCCGATGCTCTAGTTCTGTTGCTAAAAATTGCCAATTACCAACTGGAA
ATTATTATTGTAGAGAATGTATAGTTTTTGGAAGAGTTACTAGTAATGAAAATTTATATTATTTCCCACAAAAAACATTT
TCTAAAACGAATTCTTTAAAATGGAAAGGGGGACTGACACCTTATCAAAATGAGGTTTCAGAAGAGTTGTTGAAAGGTAT
TTCAAGTAAGGAAAATCTTCTTGTTCATGCTGTGACAGGGGCTGGTAAAACAGAAATGATATACCACTCTATCGCCAAAG
TAATTGATACTGGAGGAAGCGTTTGTATTGCCAGTCCTAGAATTGATGTTTGTTTAGAATTGCATAAGCGACTTTCAAAC
GATTTTAGATGTGCCATAACATTAATGCATGGAGAATCTCCTTCTTATCAGAGATCCCCTTTAACTATTGCCACAACACA
TCAATTGTTAAAATTTTATCATGCTTTTGATTTGCTAATTGTTGATGAAGTTGATGCTTTTCCATATGTCGACAACCCGA
TACTATACCATGGTGTAAAACAGGCTTTAAAGGAAAACGGAACAAGTATTTTTCTGACTGCAACTTCAACGACTGAGTTA
GAAAGAAAAGTTGCAAGAAAAGAACTAAAAAAATTGCATCTAGCTAGGAGATTTCATGCCAATCCGTTAGTGATACCCGA
GATGGTTTGGGTAAGTGGTATCCAGAAAAGCTTGCAGACACAAAAACTACCTCCCAAATTATATCAGTTGATAAATAAAC
AGCGACAAACGAGATATCCGTTGTTATTATTTTTCCCCCATATTGCAGAAGGTCAGGTATTCACCGAAATTTTAAGACAA
GCCTTTCCTATGGAAAAAATTGGTTTTGTTTCAAGTAAGAGCACATCTAGGTTAAAGTTAGTGCAAGATTTTCGAGATAA
CAAATTGTCTATCCTAGTGTCAACTACCATTCTAGAGAGAGGAGTAACTTTCCCTAGCGTCGACGTTTTTGTTATACAAG
CAAATCATCATTTGTTTACGAAAAGTTCCTTGGTACAAATTTCAGGAAGAGTTGGAAGAGCATTAGAAAGGCCCGAAGGG
CTCCTTTACTTCCTTCATGATGGGAAAAGTAAATCGATGCACCAAGCTATAAAGGAGATTAAAAACATGAATCATATAGG
AGGATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA/cflA | Streptococcus mitis NCTC 12261 |
60.422 |
99.534 |
0.601 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
59.953 |
99.534 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae D39 |
59.953 |
99.534 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae R6 |
59.953 |
99.534 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
59.953 |
99.534 |
0.597 |
| comFA/cflA | Streptococcus mitis SK321 |
59.953 |
99.534 |
0.597 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
50.254 |
91.841 |
0.462 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
37.037 |
100 |
0.373 |
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
39.312 |
94.872 |
0.373 |