Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KZH41_RS18335 Genome accession   NZ_CP080090
Coordinates   4107585..4109810 (-) Length   741 a.a.
NCBI ID   WP_263273424.1    Uniprot ID   -
Organism   Pseudomonas sp. YeP6b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4102585..4114810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH41_RS18300 (KZH41_18200) murB 4102954..4103973 (-) 1020 WP_242150548.1 UDP-N-acetylmuramate dehydrogenase -
  KZH41_RS18305 (KZH41_18205) - 4103970..4104434 (-) 465 WP_094952287.1 low molecular weight protein-tyrosine-phosphatase -
  KZH41_RS18310 (KZH41_18210) kdsB 4104434..4105198 (-) 765 WP_094952288.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KZH41_RS18315 (KZH41_18215) - 4105195..4105380 (-) 186 WP_094952289.1 Trm112 family protein -
  KZH41_RS18320 (KZH41_18220) lpxK 4105405..4106415 (-) 1011 WP_263273421.1 tetraacyldisaccharide 4'-kinase -
  KZH41_RS18325 (KZH41_18225) - 4106415..4106843 (-) 429 WP_094952291.1 ExbD/TolR family protein -
  KZH41_RS18330 (KZH41_18230) exbB 4106840..4107475 (-) 636 WP_263273422.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KZH41_RS18335 (KZH41_18235) comA 4107585..4109810 (-) 2226 WP_263273424.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZH41_RS18340 (KZH41_18240) - 4109946..4110461 (+) 516 WP_094952294.1 DUF2062 domain-containing protein -
  KZH41_RS18345 (KZH41_18245) - 4110465..4111835 (-) 1371 WP_094952295.1 sensor histidine kinase -
  KZH41_RS18350 (KZH41_18250) - 4111822..4112547 (-) 726 WP_263273427.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80305.20 Da        Isoelectric Point: 10.9810

>NTDB_id=590999 KZH41_RS18335 WP_263273424.1 4107585..4109810(-) (comA) [Pseudomonas sp. YeP6b]
MRTGMFALGLGLLSLRFFPSLPPAGWLLAMLAVALMLLPFRTHPLAFFLVGLCWACISAQWALDDRLKPALDGQTRWVQG
RVIGLPQQTSTGVRFELADSRSRTARVPKRIRVSWHGGPRVNSGEYWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATA
SVKDGQRLAPARNAWRDSLRQRLKAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRAMPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVGVLVLAFSGRLGPWNWWQAWTRAQWMIAIGLFPVLLVLGLPISLSAPVANVFAVPWISLVVLPLAL
VGAVLLAVPFVSEGLLWLAGGALDGLFRGLALLAGQRPAWIPAEVPLGYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRQLVPHGQVEVTQLDVGQGQALILRTRHHTLLYDVGPRSGAFDLGERVVLPALRTLGVGALDMMVISHAHADHAGGA
AAVALALSVKRVVGGETEGLPALLATQRCISGEQWEWDGVSFELWQWPGATSSNPKSCVLRVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSEPFLARLAPKSVLISRGRGNAFGHPHPQVMQRYQALSSRVYDSAEQGAVRLQL
GAFQSPVVARGQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=590999 KZH41_RS18335 WP_263273424.1 4107585..4109810(-) (comA) [Pseudomonas sp. YeP6b]
ATGAGAACAGGGATGTTTGCGCTCGGACTTGGACTGCTTTCACTGCGATTTTTCCCGTCTCTACCGCCGGCCGGATGGCT
ACTGGCGATGTTGGCGGTGGCCTTGATGCTGTTGCCTTTTCGCACCCACCCGCTGGCGTTCTTCCTCGTGGGCTTGTGCT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGCGCTGGATGGGCAAACGCGCTGGGTGCAGGGG
CGTGTGATCGGGTTGCCGCAGCAGACCAGCACCGGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGAGT
GCCCAAGCGCATCCGGGTGTCCTGGCACGGTGGCCCGCGGGTCAACAGCGGCGAGTATTGGCGCTTGGCGGTGACGTTGA
AGCGGCCATCGGGGTTGCTCAATTTTCATGGCTTTGACTACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCAACCGCC
TCGGTAAAAGACGGCCAGCGCTTGGCGCCGGCTCGCAACGCCTGGCGCGACAGCCTCCGCCAGCGCCTGAAAGCCGTGGA
TGCCCAGGGCCGCGAGGCTGGCCTGGCGGCACTGGTGCTGGGCGACGGCTCAGGGCTGGCCGCTGAAGATTGGCGGGTGC
TGCAGGACACCGGAACCGTACACCTGCTGGTGATTTCCGGCCAACACATCGGTTTGTTGGCGGGGCTGATCTACGGCTTG
GTGGCCGGGCTGGCGCGCTACGGTTGCTGGCCCCGAGCCATGCCGTGGCTGCCGTGGGCGTGCGGCCTAGCGTTTGCCGC
CGCGCTGGGGTACGGCTTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCATGTGTGATGGTCGGGTTGGTCCTGCTCT
GGCGTTTGCGCTTTCGGCATTTGGGCGTCTGGTGGCCGTTGTTGCTGGCGCTCAATGGCGTGCTGATATTGGAACCATTG
GCCAGTTTGCAGCCAGGATTCTGGCTGTCGTTTGCCGCCGTTGGGGTGCTGGTGCTGGCCTTCAGCGGGCGCCTGGGGCC
ATGGAACTGGTGGCAAGCATGGACGCGTGCGCAGTGGATGATCGCCATCGGCTTGTTTCCAGTGTTGCTGGTGCTCGGCT
TGCCCATCAGCCTCAGTGCGCCCGTGGCTAACGTGTTTGCCGTGCCGTGGATCAGCCTCGTGGTGTTGCCCTTGGCGCTG
GTCGGGGCTGTGCTGCTGGCGGTACCGTTTGTGAGCGAGGGCTTGTTGTGGCTGGCCGGCGGGGCGTTGGATGGGCTGTT
CAGGGGCTTGGCACTGCTGGCAGGGCAGCGCCCGGCCTGGATACCGGCCGAGGTGCCCTTGGGTTATTGGTTAGTGAGCC
TGGCGGGCGCGGTACTGCTGCTGTTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTATTGCTGGCGGTC
TTCCCGCCCAGGCAACTGGTGCCTCATGGGCAAGTAGAAGTGACGCAGTTGGATGTTGGCCAGGGGCAAGCGCTGATCCT
GCGCACACGCCACCACACGCTGCTTTACGACGTAGGGCCGCGCTCGGGGGCATTTGACCTGGGTGAGCGCGTGGTACTGC
CTGCGCTCAGAACGCTCGGAGTAGGGGCGTTGGACATGATGGTGATCAGCCATGCTCACGCTGATCATGCCGGCGGCGCG
GCCGCGGTTGCCCTTGCGCTTTCGGTAAAGCGCGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCATTGCTTGCCACACA
GCGCTGTATCAGCGGTGAGCAGTGGGAGTGGGATGGCGTGTCATTTGAGCTGTGGCAGTGGCCTGGCGCCACTAGTAGCA
ACCCGAAATCCTGTGTGTTGCGGGTACAGGCTAACGGTGAACGACTGCTGCTGACCGGCGATATTGACCGCGCCGCCGAA
CAGGCTTTTCTCGCATCTCCCTTGGCCGTACCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCGTC
CGAGCCCTTCCTGGCGCGGCTTGCGCCTAAGTCGGTGCTGATTTCCCGTGGCCGTGGCAACGCATTCGGTCATCCCCATC
CGCAGGTGATGCAGCGTTATCAGGCACTCAGCAGCCGGGTGTACGACAGCGCCGAGCAAGGTGCCGTACGTCTGCAACTG
GGCGCATTTCAATCACCTGTTGTTGCGCGCGGTCAACGCCGTTTCTGGCGTGAAGCGTTACCGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.465

100

0.37