Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KZH41_RS18330 Genome accession   NZ_CP080090
Coordinates   4106840..4107475 (-) Length   211 a.a.
NCBI ID   WP_263273422.1    Uniprot ID   -
Organism   Pseudomonas sp. YeP6b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4101840..4112475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH41_RS18295 (KZH41_18195) - 4102220..4102891 (+) 672 WP_094952285.1 Bax inhibitor-1/YccA family protein -
  KZH41_RS18300 (KZH41_18200) murB 4102954..4103973 (-) 1020 WP_242150548.1 UDP-N-acetylmuramate dehydrogenase -
  KZH41_RS18305 (KZH41_18205) - 4103970..4104434 (-) 465 WP_094952287.1 low molecular weight protein-tyrosine-phosphatase -
  KZH41_RS18310 (KZH41_18210) kdsB 4104434..4105198 (-) 765 WP_094952288.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KZH41_RS18315 (KZH41_18215) - 4105195..4105380 (-) 186 WP_094952289.1 Trm112 family protein -
  KZH41_RS18320 (KZH41_18220) lpxK 4105405..4106415 (-) 1011 WP_263273421.1 tetraacyldisaccharide 4'-kinase -
  KZH41_RS18325 (KZH41_18225) - 4106415..4106843 (-) 429 WP_094952291.1 ExbD/TolR family protein -
  KZH41_RS18330 (KZH41_18230) exbB 4106840..4107475 (-) 636 WP_263273422.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KZH41_RS18335 (KZH41_18235) comA 4107585..4109810 (-) 2226 WP_263273424.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZH41_RS18340 (KZH41_18240) - 4109946..4110461 (+) 516 WP_094952294.1 DUF2062 domain-containing protein -
  KZH41_RS18345 (KZH41_18245) - 4110465..4111835 (-) 1371 WP_094952295.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23065.29 Da        Isoelectric Point: 6.8768

>NTDB_id=590998 KZH41_RS18330 WP_263273422.1 4106840..4107475(-) (exbB) [Pseudomonas sp. YeP6b]
MWELVKSGGWMMLPIIMSSIAALGIIAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMITNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=590998 KZH41_RS18330 WP_263273422.1 4106840..4107475(-) (exbB) [Pseudomonas sp. YeP6b]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCATCACGCCTGAGCATCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAAGACAAGCTCAAGGAACTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCCGCGGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCGGCCGCACGGGTCATCCATGAAATGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTTGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGATCACTAACGCCGCCGTGTTGGCCGGCGGTATCTCCAAGGCCTTGATCACCACGGCT
GCGGGCTTGATGGTCGGCATTCCCTCGGTATTTTTCCACCGGTTCCTGCAGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGCGATGTCGATTTCGTCGAGGGCCGAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834