Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZO17_RS13690 Genome accession   NZ_CP080080
Coordinates   2827799..2828428 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 19SZHZ886Rt     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2822799..2833428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO17_RS13675 (KZO17_13660) helD 2823041..2825095 (-) 2055 WP_001295354.1 DNA helicase IV -
  KZO17_RS13680 (KZO17_13665) yccF 2825218..2825664 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KZO17_RS13685 (KZO17_13670) yccS 2825674..2827836 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KZO17_RS13690 (KZO17_13675) sxy/tfoX 2827799..2828428 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZO17_RS13695 (KZO17_13680) sulA 2828647..2829156 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KZO17_RS13700 (KZO17_13685) ompA 2829513..2830553 (+) 1041 WP_000750416.1 porin OmpA -
  KZO17_RS13705 (KZO17_13690) matP 2830629..2831081 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZO17_RS13710 (KZO17_13695) ycbZ 2831267..2833027 (+) 1761 WP_097479646.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=590956 KZO17_RS13690 WP_000839153.1 2827799..2828428(-) (sxy/tfoX) [Escherichia coli strain 19SZHZ886Rt]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=590956 KZO17_RS13690 WP_000839153.1 2827799..2828428(-) (sxy/tfoX) [Escherichia coli strain 19SZHZ886Rt]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1