Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   FGCSD_RS09080 Genome accession   NZ_AP018726
Coordinates   1828020..1829054 (-) Length   344 a.a.
NCBI ID   WP_129556173.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1823020..1834054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS09045 (FGCSD_1759) - 1823644..1823946 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  FGCSD_RS09050 (FGCSD_1760) - 1823939..1824235 (-) 297 WP_003057040.1 YlxR family protein -
  FGCSD_RS09055 (FGCSD_1761) nusA 1824251..1825408 (-) 1158 WP_003052330.1 transcription termination factor NusA -
  FGCSD_RS09060 (FGCSD_1762) rimP 1825551..1826000 (-) 450 WP_231112742.1 ribosome maturation factor RimP -
  FGCSD_RS09070 (FGCSD_1763) trmB 1826529..1827164 (-) 636 WP_129556172.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGCSD_RS09075 (FGCSD_1764) - 1827164..1827955 (-) 792 WP_003052472.1 phosphotransferase family protein -
  FGCSD_RS09080 (FGCSD_1765) pptB 1828020..1829054 (-) 1035 WP_129556173.1 ABC transporter permease Regulator
  FGCSD_RS09085 (FGCSD_1766) pptA 1829057..1829782 (-) 726 WP_129556174.1 ABC transporter ATP-binding protein Regulator
  FGCSD_RS09090 (FGCSD_1767) - 1829854..1830273 (+) 420 WP_012767493.1 HIT family protein -
  FGCSD_RS09095 (FGCSD_1768) - 1830270..1830599 (+) 330 WP_129556175.1 chemotaxis protein -
  FGCSD_RS09100 (FGCSD_1769) - 1830760..1832028 (-) 1269 WP_129556176.1 LCP family protein -
  FGCSD_RS09105 (FGCSD_1770) - 1832040..1832561 (-) 522 WP_129556177.1 GNAT family N-acetyltransferase -
  FGCSD_RS09110 (FGCSD_1771) tsaE 1832554..1832997 (-) 444 WP_115247110.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40241.51 Da        Isoelectric Point: 10.2471

>NTDB_id=59050 FGCSD_RS09080 WP_129556173.1 1828020..1829054(-) (pptB) [Streptococcus dysgalactiae strain Kdys0611]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRVNLLTFLRGLSCLILVINLLLCHSLEKA
LILVVVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=59050 FGCSD_RS09080 WP_129556173.1 1828020..1829054(-) (pptB) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAACC
ATTGGCCTATATGGCTTTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAGCGCTCTGCTCTTGTGAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCCTAGTTACTTTTG
CTCTTTTGCTTTTGGGATTACTAGCTCTAAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTGTTATTATTGAGT
TCCCTAGCCTTGCTATTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCCTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGTGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTGGTCATGGGAGTCATTACACTTTTCTACCTTCCTTATAAGTTGAAGAAGATAATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.55

100

0.48

  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468


Multiple sequence alignment