Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BALI_RS13845 Genome accession   NC_021362
Coordinates   2816322..2816951 (-) Length   209 a.a.
NCBI ID   WP_020452274.1    Uniprot ID   -
Organism   Bacillus paralicheniformis ATCC 9945a     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811322..2821951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BALI_RS13825 (BaLi_c28330) holA 2811881..2812906 (-) 1026 WP_020452271.1 DNA polymerase III subunit delta -
  BALI_RS21995 (BaLi_c28340) - 2813136..2813267 (+) 132 WP_003183686.1 YqzM family protein -
  BALI_RS13835 (BaLi_c28350) - 2813292..2815679 (-) 2388 WP_041817260.1 DNA internalization-related competence protein ComEC/Rec2 -
  BALI_RS13840 (BaLi_c28360) - 2815684..2816253 (-) 570 WP_020452273.1 ComE operon protein 2 -
  BALI_RS13845 (BaLi_c28370) comEA 2816322..2816951 (-) 630 WP_020452274.1 helix-hairpin-helix domain-containing protein Machinery gene
  BALI_RS13850 (BaLi_c28380) comER 2817034..2817855 (+) 822 WP_020452275.1 late competence protein ComER -
  BALI_RS13855 (BaLi_c28390) - 2817925..2818680 (-) 756 WP_020452276.1 class I SAM-dependent DNA methyltransferase -
  BALI_RS13860 (BaLi_c28400) rsfS 2818677..2819033 (-) 357 WP_020452277.1 ribosome silencing factor -
  BALI_RS13865 (BaLi_c28410) yqeK 2819047..2819610 (-) 564 WP_020452278.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BALI_RS13870 (BaLi_c28420) - 2819600..2820169 (-) 570 WP_020452279.1 nicotinate-nucleotide adenylyltransferase -
  BALI_RS13875 (BaLi_c28430) yhbY 2820188..2820478 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  BALI_RS13880 (BaLi_c28440) aroE 2820472..2821308 (-) 837 WP_020452280.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22592.49 Da        Isoelectric Point: 4.6439

>NTDB_id=59013 BALI_RS13845 WP_020452274.1 2816322..2816951(-) (comEA) [Bacillus paralicheniformis ATCC 9945a]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSDISIPEEASAQTFDKKEEVKLKKNAGEEEVIIDLKGAVKNPGV
YQMKEGDRVHDALKKAGGTEKKADQKQINLAAVLRDGMVLYIPFEGEEAAGSLSEADSRADGSSGDIVNINTASSEELQT
IPGIGPSKAEAVIEYREENGMFQTIEDITNVSGIGEKSFERIKSSITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=59013 BALI_RS13845 WP_020452274.1 2816322..2816951(-) (comEA) [Bacillus paralicheniformis ATCC 9945a]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCGGCGGGAGGAGTGGCACTCGTCTTGATCATCAGCGCGGCCTTCAT
GCTGTTAAGCGGAAAGCGCGAAACTTCATCCGACATTTCCATTCCTGAAGAGGCTTCTGCACAGACTTTTGACAAGAAAG
AGGAAGTGAAGCTGAAAAAAAACGCGGGGGAAGAGGAGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAGGAGGGAGACAGGGTGCACGATGCATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGACCAAAAGCA
AATTAATCTGGCGGCCGTTTTGCGGGACGGTATGGTTCTTTACATTCCATTTGAAGGGGAAGAGGCCGCTGGCTCTCTTT
CGGAAGCGGACTCAAGAGCAGACGGCAGCTCAGGTGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGACG
ATTCCCGGGATCGGTCCTTCAAAAGCGGAAGCGGTAATCGAATACCGTGAGGAGAACGGAATGTTTCAGACGATTGAAGA
CATAACAAACGTTTCGGGAATTGGAGAGAAGTCTTTTGAAAGAATAAAATCTTCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(69-122)

Helix-hairpin-helix motif (HHH_3)

(146-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

52.804

100

0.541
  comEA Staphylococcus aureus MW2

35.909

100

0.378
  comEA Staphylococcus aureus N315

35.455

100

0.373

Multiple sequence alignment