Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPB404_RS08730 Genome accession   NZ_CP079821
Coordinates   1729061..1729555 (-) Length   164 a.a.
NCBI ID   WP_006595680.1    Uniprot ID   A0A4Z1DUY6
Organism   Streptococcus rubneri strain LPB0404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1724061..1734555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS08710 (LPB404_08710) - 1726325..1727269 (+) 945 WP_006597173.1 magnesium transporter CorA family protein -
  LPB404_RS08715 (LPB404_08715) - 1727298..1727972 (+) 675 WP_219074630.1 DUF1129 family protein -
  LPB404_RS08720 (LPB404_08720) - 1728010..1728528 (-) 519 WP_219074631.1 GNAT family N-acetyltransferase -
  LPB404_RS08725 (LPB404_08725) rpsR 1728780..1729019 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  LPB404_RS08730 (LPB404_08730) ssb 1729061..1729555 (-) 495 WP_006595680.1 single-stranded DNA-binding protein Machinery gene
  LPB404_RS08735 (LPB404_08735) rpsF 1729582..1729872 (-) 291 WP_023024266.1 30S ribosomal protein S6 -
  LPB404_RS08740 (LPB404_08740) - 1730150..1731202 (+) 1053 WP_219074632.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  LPB404_RS08745 (LPB404_08745) - 1731189..1732091 (+) 903 WP_219074633.1 phosphodiester glycosidase family protein -
  LPB404_RS08750 (LPB404_08750) - 1732072..1732488 (+) 417 WP_219074634.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17849.59 Da        Isoelectric Point: 4.7079

>NTDB_id=589775 LPB404_RS08730 WP_006595680.1 1729061..1729555(-) (ssb) [Streptococcus rubneri strain LPB0404]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYASAGGFAGNAAPSFGGSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=589775 LPB404_RS08730 WP_006595680.1 1729061..1729555(-) (ssb) [Streptococcus rubneri strain LPB0404]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAATCAGGCTGTTGC
GACATTCTCACTCGCTGTTAACCGTAATTTCAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCGAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTGTTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCAGGTGGTGGTTATGCTTCTGCTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGGAT
CTGAACCATCTAACGCAACACCAAACTTTGGACGTGATGACAATCCATTTGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1DUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366