Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LPB404_RS07660 Genome accession   NZ_CP079821
Coordinates   1514190..1514999 (-) Length   269 a.a.
NCBI ID   WP_023023917.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509190..1519999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS07645 (LPB404_07645) smc 1509193..1512738 (-) 3546 WP_219074526.1 chromosome segregation protein SMC -
  LPB404_RS07650 (LPB404_07650) rnc 1512729..1513430 (-) 702 WP_125374528.1 ribonuclease III -
  LPB404_RS07655 (LPB404_07655) - 1513589..1513978 (-) 390 WP_373689705.1 YbaN family protein -
  LPB404_RS07660 (LPB404_07660) vicX 1514190..1514999 (-) 810 WP_023023917.1 MBL fold metallo-hydrolase Regulator
  LPB404_RS07665 (LPB404_07665) micB 1515008..1516354 (-) 1347 WP_125374346.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LPB404_RS07670 (LPB404_07670) micA 1516347..1517048 (-) 702 WP_125374347.1 response regulator YycF Regulator
  LPB404_RS07675 (LPB404_07675) - 1517623..1518672 (+) 1050 WP_023023923.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29702.64 Da        Isoelectric Point: 5.7538

>NTDB_id=589769 LPB404_RS07660 WP_023023917.1 1514190..1514999(-) (vicX) [Streptococcus rubneri strain LPB0404]
MDEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGSKYLGKVDDSQKHLFEMGKTVTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNKTKKIYLGHLSKENNIKELAHMTMVN
QLARADLAVGHDFDVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=589769 LPB404_RS07660 WP_023023917.1 1514190..1514999(-) (vicX) [Streptococcus rubneri strain LPB0404]
ATGGATGAAAAAGGGTTTAAGTATAGTATTTTAGCTTCGGGTTCGAGTGGTAATTCATTTTACCTAGAGACACCTAAGAA
AAAAATTCTAGTAGATGCAGGCTTGTCCGGGAAGAAGATTACAGGTTTGCTTGCAGAAATTGATCGAAAACCCGAAGATC
TTGACGCTATTTTGATTACACATGAACATTCAGATCACATTCATGGTGTTGGTGTACTAGCTCGTAAATACGGGATGGAC
CTATACGCCAATGAAGCTACATGGAAGGCCATGGAGGGAAGCAAGTACCTTGGGAAGGTTGATGACTCCCAGAAACATCT
TTTTGAAATGGGCAAGACCGTAACCTTCGGGGATTTGGATGTGGAAAGTTTTGGTGTCAGTCATGATGCTGCAGCTCCCC
AGTTCTATCGTTTCATGAAGGATGGGAAGAGTTTTGTCATGCTGACGGATACAGGTTATGTCAGTGATCGAATGGCAGGG
ATTGTTGAAAATGCAGATGGCTATTTGATCGAGTCCAACCACGATGTGGAAATCCTACGAGCTGGCTCTTATGCTTGGCG
ATTAAAGCAGCGGATTTTATCTGATTTGGGCCACCTCTCTAATGAAGATGGTGCAGATGCCATGATTCGGACTCTAGGCA
ATAAGACCAAAAAGATTTATCTGGGCCACTTATCCAAGGAAAACAATATCAAGGAATTGGCCCATATGACCATGGTCAAT
CAACTGGCTCGAGCAGATCTAGCAGTGGGGCATGATTTTGACGTCTTGGATACATCTCCAGATACAGCGACTCCATTAGT
AGATATCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781