Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB404_RS06865 Genome accession   NZ_CP079821
Coordinates   1369667..1371667 (-) Length   666 a.a.
NCBI ID   WP_023023738.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364667..1376667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS06855 (LPB404_06855) trxA 1366072..1366386 (-) 315 WP_006595996.1 thioredoxin -
  LPB404_RS06860 (LPB404_06860) - 1366481..1369552 (-) 3072 WP_219074424.1 CocE/NonD family hydrolase -
  LPB404_RS06865 (LPB404_06865) amiA3 1369667..1371667 (-) 2001 WP_023023738.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS06870 (LPB404_06870) trpA 1371777..1372562 (-) 786 WP_023023740.1 tryptophan synthase subunit alpha -
  LPB404_RS06875 (LPB404_06875) trpB 1372565..1373767 (-) 1203 WP_219074425.1 tryptophan synthase subunit beta -
  LPB404_RS06880 (LPB404_06880) - 1373764..1374345 (-) 582 WP_219074426.1 phosphoribosylanthranilate isomerase -
  LPB404_RS06885 (LPB404_06885) trpC 1374332..1375099 (-) 768 WP_219074427.1 indole-3-glycerol phosphate synthase TrpC -
  LPB404_RS06890 (LPB404_06890) trpD 1375096..1376100 (-) 1005 WP_219074428.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73998.17 Da        Isoelectric Point: 4.6782

>NTDB_id=589766 LPB404_RS06865 WP_023023738.1 1369667..1371667(-) (amiA3) [Streptococcus rubneri strain LPB0404]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTADDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTSKTTDEEKSSTKKALLNKDFRQAISFAFDREAYAAQANGKDGASKLIRNLYIPPTFVQADGKSFGEMVKSELVTY
GDEWKDANLDDGQNGLYNAKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVD
EAGAETQDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKNHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=589766 LPB404_RS06865 WP_023023738.1 1369667..1371667(-) (amiA3) [Streptococcus rubneri strain LPB0404]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCTGGTGGTTC
TAAATCATCTAGCTCTAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCATACGTCTATGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCACGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGAAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCTAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGATGACTTCGTTGCAGGTATCAAATATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAATTCCATCAAGGGCTTGAATGATTATGTTGAAGGAAAGACC
TCTGATTTCTCAAATGTTGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAGGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACGTTCCCTATCAACGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACTAGCTCTCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAAGACAATGTTCACATCACAGACGTTAAGCTAGAATACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCATTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACTGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACTCCACAAGATGCCAGCACCTTCGTTATCGGTGTCAACATCGATCGTCAG
TCATACAAGTACACATCAAAAACAACTGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCGATCAGCTTTGCCTTTGACCGTGAAGCCTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGTAAGAGCTTCGGTGAGATGGTTAAATCTGAGTTGGTGACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAAAATGGTCTTTACAACGCAAAACAAGCCAAAGAAGAGTTTGC
GAAAGCTAAATCTGCACTTGAAGCAGATGGTGTAAAATTCCCAATCCACTTGGATATGCCAGTAGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCCTTCAAACAATCAGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTAACGCTCTTTGCTGCTAAGGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAACACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAACGAGGCAGCTAAGAAAGTTGGTCTCTACGACTTTGAGAAGATGGTCGAT
GAAGCCGGAGCTGAAACACAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGC
TTTGGTCATCCCAACAACATCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTCTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGTATGGAACTTCAAGACAAGGCTGTTACTACTGAAGACTACAAC
AAAGCTCTCGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAAACCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.522

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.372

100

0.565