Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB404_RS03725 Genome accession   NZ_CP079821
Coordinates   731318..733282 (-) Length   654 a.a.
NCBI ID   WP_219075073.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 726318..738282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS03705 (LPB404_03705) - 727237..727500 (-) 264 WP_003006096.1 SemiSWEET family transporter -
  LPB404_RS03710 (LPB404_03710) - 727781..728038 (+) 258 WP_003011864.1 SemiSWEET family transporter -
  LPB404_RS03715 (LPB404_03715) - 728214..728981 (+) 768 WP_219075071.1 ABC transporter ATP-binding protein -
  LPB404_RS03720 (LPB404_03720) - 728974..730983 (+) 2010 WP_219075072.1 FtsX-like permease family protein -
  LPB404_RS03725 (LPB404_03725) amiA3 731318..733282 (-) 1965 WP_219075073.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS03730 (LPB404_03730) - 733517..733846 (+) 330 WP_117745049.1 PadR family transcriptional regulator -
  LPB404_RS03735 (LPB404_03735) - 733843..734673 (+) 831 WP_117745048.1 hypothetical protein -
  LPB404_RS03740 (LPB404_03740) - 734774..735010 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  LPB404_RS03745 (LPB404_03745) - 735003..735701 (+) 699 WP_219075074.1 3-oxoacyl-ACP reductase -
  LPB404_RS03750 (LPB404_03750) - 735878..736216 (+) 339 WP_023026507.1 hypothetical protein -
  LPB404_RS03755 (LPB404_03755) - 736269..736829 (+) 561 WP_023026509.1 SUKH-4 immunity protein -
  LPB404_RS03760 (LPB404_03760) - 736861..737367 (+) 507 WP_117745101.1 Imm26 family immunity protein -
  LPB404_RS03765 (LPB404_03765) - 737379..738005 (+) 627 WP_195348134.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72870.91 Da        Isoelectric Point: 4.6426

>NTDB_id=589755 LPB404_RS03725 WP_219075073.1 731318..733282(-) (amiA3) [Streptococcus rubneri strain LPB0404]
MKKSKLAFLAGVTVASALFLASCGSSSKSSQTNTYSYVFSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAVDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLKSAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNENYYDKD
NVKIDDIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTFSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGASKTLRTLLVPPTFVQVDNKDFGTVVEEKLAATGDDWKDVSL
ADAQDSMFNADKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKLSTEDADN
ATYFAQSPDQKDFDMDIAGWGPDFQDPSTYLDIFNPVDGSALAGMGINPATDQALIEKLGLNEYKQLLDDANAEQLDTKT
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTKAFSLIGIKDGASYYKYMELQSDTVTTADYDKAYKNWLKEKEE
TNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=589755 LPB404_RS03725 WP_219075073.1 731318..733282(-) (amiA3) [Streptococcus rubneri strain LPB0404]
ATGAAAAAATCTAAACTAGCTTTCCTAGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCATGTGGATCATCTTC
AAAATCTTCTCAGACAAACACCTACTCATACGTGTTTAGCACTGATCCAGATTCTTTGAACTACCTCCTTTCAAACCGTT
CTACAACAAGTGACGTTACAACTAATTTAGTAGATGGACTTTTTGAAAACGACCAATACGGTAACTTGGTCCCTGCCCTA
GCAGAAGATTGGTCTGTTTCTAAGGATGGATTGACTTATACTTACAAACTTCGTAAAGATGCAAAATGGTATGACTCAGA
AGGGAACGAATATGCAGATGTCACTGCACAGGACTTCGTCACTTCTCTGAAATACGTAGCGGACAACAAATCAGATGCCC
TCTACTTGGTTCAAAACTCAGTAGCCGGCCTGGATGACTATGTCACCGGTAAAAATACGGACTTCTCTAAAGTTGGAGTC
AAAGCTGTTGACGACCATACCCTCCAATACACCTTGGCTCAACCGGAGTCCTTCTGGAATTCTAAATTGACAACTTCGAC
CATGATGCCCGTCAATGAAAAATTCCTTAAGTCTGCAGGTAAAGACTTTGGTAGCGTCAAACCTTCTGGAATCCTCTACA
ACGGTCCTTACTACTTGAAATCCTTCACTTCAAAATCGTTGATGGAGTTCACCAAGAACGAGAACTACTACGACAAAGAC
AATGTGAAGATCGATGATATCAAATTGACCTACTTCGATGGTTCTGACCAAGACTACCTGGCTCGTAACTTCTCTGATGG
AAACTTGACCACTGCGCGTCTCTTCCCAACGAGCTCAACCTTCAGTACCATTGAGAAAAAATTCAAGGACAATATCGTTT
ATTCACCACAAGATGCGACTGTCTACTATGTCTACTTCAACGTAAACCGTCAAAACTACGGTCATACTGAGAAAACAACA
GACGACCAGAAGAACCAAACCAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCACTAAGTGCCCAATCAAACGGGAAAGATGGTGCTAGCAAAACCCTTCGTACGCTTCTTGTACCTCCAACATTTGTGC
AAGTGGACAACAAAGACTTCGGTACTGTTGTTGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATGCGGACAAGGCTAAAGCACAATTTGCTAAAGCCAAAGAAGAGCTCCAAGCACA
AGGTGTTCAATTCCCAATCCACATCGACTATGTGGTTGACCAGTCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTTGTCGTGGATGTTCAGAAATTGTCTACGGAAGATGCGGACAAT
GCAACCTACTTCGCTCAAAGTCCTGATCAAAAAGACTTTGATATGGATATCGCTGGTTGGGGACCTGACTTCCAAGATCC
ATCAACTTACTTGGATATCTTCAATCCAGTCGATGGTTCAGCCTTAGCAGGTATGGGAATCAATCCGGCAACTGACCAAG
CCCTAATTGAAAAACTAGGTTTGAACGAGTACAAACAACTATTGGATGATGCCAATGCAGAACAATTGGATACCAAAACT
CGTTATGAAAAATATGCTGTTGCTCAAGCTTGGTTGACAGACAATGCCTTTGCACTTCCTGTCTACTCTAAAGGTGCTGT
TCCTTCTATCACGAAGATCAAACCATTTACAAAAGCCTTCTCCTTGATTGGTATCAAAGACGGGGCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATACAGTCACAACGGCTGACTACGACAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
ACCAATAAAAAAGCACAAGAAGAACTTGCAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.869

100

0.543
  amiA Streptococcus salivarius strain HSISS4

53.799

100

0.541
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.54