Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LPB404_RS02430 Genome accession   NZ_CP079821
Coordinates   476050..477309 (+) Length   419 a.a.
NCBI ID   WP_219074950.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 471050..482309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02405 (LPB404_02405) clpC 471154..473259 (+) 2106 WP_219074947.1 AAA family ATPase Regulator
  LPB404_RS02410 (LPB404_02410) - 473549..473794 (+) 246 WP_023022151.1 hypothetical protein -
  LPB404_RS02415 (LPB404_02415) yajC 473983..474312 (+) 330 WP_023022152.1 preprotein translocase subunit YajC -
  LPB404_RS02420 (LPB404_02420) - 474444..475193 (+) 750 WP_219074948.1 isoprenyl transferase -
  LPB404_RS02425 (LPB404_02425) - 475205..476008 (+) 804 WP_219074949.1 phosphatidate cytidylyltransferase -
  LPB404_RS02430 (LPB404_02430) eeP 476050..477309 (+) 1260 WP_219074950.1 RIP metalloprotease RseP Regulator
  LPB404_RS02435 (LPB404_02435) - 477327..479177 (+) 1851 WP_219074951.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46258.76 Da        Isoelectric Point: 6.3987

>NTDB_id=589739 LPB404_RS02430 WP_219074950.1 476050..477309(+) (eeP) [Streptococcus rubneri strain LPB0404]
MQFIAFIIIFGVIVLVHEFGHFYFAKKSGILVREFAIGMGPKIFAHVGKDGTAYTIRILPLGGYVRMAGWGEDTTEIKTG
TPVSLTLNPEGTVVRINLSGKNIDQTALPMNVTDFDFEDKLQITGIVIEETKTYPVHHDATIVEEDGTEVRIAPLDVQYQ
NASIWGRLITNFAGPMNNFILSIVVYSLLAFMRGGAVDYYSNHVQVIPQGVVAKAGLKDNDQIVQINDYKVSNWDELTDS
VQKATRNQGKNPEVTITYERDGKTQKVTVQPEEDGGRYYIGVTNAVKTGFLDKLLSGVTDTWYTATRILTALKDIIFHFS
LNKLGGPVAIYKASSQAAELGLPAILSLMAMLSINIGIFNLIPIPALDGGKILINLIELVRRKPLKQEVETYLTLAGVAV
MVILMIAVTWNDIMKLFLK

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=589739 LPB404_RS02430 WP_219074950.1 476050..477309(+) (eeP) [Streptococcus rubneri strain LPB0404]
ATGCAATTTATTGCCTTTATTATCATTTTTGGCGTCATTGTCCTAGTGCATGAGTTCGGTCATTTCTATTTTGCGAAAAA
ATCAGGTATCCTAGTCCGCGAGTTTGCGATTGGAATGGGGCCGAAGATTTTTGCTCATGTAGGCAAGGACGGAACAGCCT
ATACCATTCGAATCCTTCCATTAGGGGGCTATGTCCGAATGGCCGGTTGGGGCGAAGACACGACAGAGATTAAGACAGGA
ACGCCTGTCAGTCTGACTTTGAACCCTGAGGGAACAGTTGTTCGAATCAACCTTTCTGGAAAGAATATCGACCAGACAGC
TCTCCCTATGAATGTCACAGATTTTGATTTTGAGGATAAACTTCAAATTACAGGAATCGTCATCGAAGAGACCAAAACCT
ATCCTGTTCACCATGATGCAACCATCGTTGAGGAAGATGGGACAGAAGTACGGATTGCTCCTCTAGATGTGCAGTATCAA
AACGCTAGTATCTGGGGACGTCTGATTACCAACTTTGCTGGTCCGATGAACAACTTTATCTTAAGTATTGTCGTGTACTC
TCTCCTGGCCTTTATGCGGGGAGGTGCAGTAGACTACTATAGCAACCATGTTCAGGTCATTCCCCAAGGAGTGGTGGCTA
AGGCTGGTTTGAAAGACAATGACCAGATCGTTCAGATTAATGACTATAAGGTCTCCAATTGGGATGAGTTGACAGATTCT
GTCCAGAAGGCGACCCGTAACCAAGGAAAAAATCCAGAAGTAACGATTACCTATGAACGAGATGGGAAAACTCAAAAAGT
GACGGTTCAACCAGAAGAAGATGGGGGACGGTATTATATCGGAGTAACCAATGCTGTCAAGACTGGTTTCCTAGATAAGC
TTCTCTCAGGTGTGACAGATACTTGGTACACAGCAACTCGTATTTTGACGGCCTTGAAGGATATCATCTTCCACTTTAGT
TTGAACAAGTTGGGTGGTCCGGTAGCGATCTACAAAGCTAGTTCGCAAGCTGCGGAGCTAGGACTTCCAGCTATCCTATC
CTTGATGGCCATGCTGTCTATTAATATCGGAATCTTTAACTTGATTCCTATTCCAGCTTTGGATGGTGGCAAAATCTTGA
TCAATCTGATCGAGCTTGTTCGTAGAAAACCTCTTAAACAGGAGGTAGAAACCTACTTGACCCTTGCTGGAGTGGCGGTC
ATGGTTATCTTGATGATTGCTGTGACTTGGAACGATATCATGAAATTATTTTTGAAATAG

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(5-404)

PDZ domain (PDZ_2)

(204-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

65.144

99.284

0.647
  eeP Streptococcus thermophilus LMG 18311

64.904

99.284

0.644