Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LPB404_RS02405 | Genome accession | NZ_CP079821 |
| Coordinates | 471154..473259 (+) | Length | 701 a.a. |
| NCBI ID | WP_219074947.1 | Uniprot ID | - |
| Organism | Streptococcus rubneri strain LPB0404 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 466154..478259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB404_RS02375 (LPB404_02375) | - | 466354..466554 (+) | 201 | WP_123159785.1 | hypothetical protein | - |
| LPB404_RS02380 (LPB404_02380) | - | 466654..467655 (+) | 1002 | WP_123159784.1 | uroporphyrinogen decarboxylase family protein | - |
| LPB404_RS02385 (LPB404_02385) | - | 467683..468561 (+) | 879 | WP_123159783.1 | transporter substrate-binding domain-containing protein | - |
| LPB404_RS02390 (LPB404_02390) | - | 468628..469320 (+) | 693 | WP_123159782.1 | amino acid ABC transporter permease | - |
| LPB404_RS02395 (LPB404_02395) | - | 469324..470010 (+) | 687 | WP_006595037.1 | amino acid ABC transporter permease | - |
| LPB404_RS02400 (LPB404_02400) | - | 470030..470794 (+) | 765 | WP_006595036.1 | amino acid ABC transporter ATP-binding protein | - |
| LPB404_RS02405 (LPB404_02405) | clpC | 471154..473259 (+) | 2106 | WP_219074947.1 | AAA family ATPase | Regulator |
| LPB404_RS02410 (LPB404_02410) | - | 473549..473794 (+) | 246 | WP_023022151.1 | hypothetical protein | - |
| LPB404_RS02415 (LPB404_02415) | yajC | 473983..474312 (+) | 330 | WP_023022152.1 | preprotein translocase subunit YajC | - |
| LPB404_RS02420 (LPB404_02420) | - | 474444..475193 (+) | 750 | WP_219074948.1 | isoprenyl transferase | - |
| LPB404_RS02425 (LPB404_02425) | - | 475205..476008 (+) | 804 | WP_219074949.1 | phosphatidate cytidylyltransferase | - |
| LPB404_RS02430 (LPB404_02430) | eeP | 476050..477309 (+) | 1260 | WP_219074950.1 | RIP metalloprotease RseP | Regulator |
Sequence
Protein
Download Length: 701 a.a. Molecular weight: 77645.50 Da Isoelectric Point: 4.7415
>NTDB_id=589738 LPB404_RS02405 WP_219074947.1 471154..473259(+) (clpC) [Streptococcus rubneri strain LPB0404]
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPNDGSEQVQHQQGKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNNEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNMIQEVKAMGNVILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVVLPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIQAEKNKQEEAAAKEDYEAALNAKIRIEELEKQIANHTEDHKVTATINDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLVEVNKTLAKKDIDLLVSDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDHLDAKHLLADMEDGELVIKENGTSEE
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPNDGSEQVQHQQGKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNNEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNMIQEVKAMGNVILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVVLPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIQAEKNKQEEAAAKEDYEAALNAKIRIEELEKQIANHTEDHKVTATINDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLVEVNKTLAKKDIDLLVSDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDHLDAKHLLADMEDGELVIKENGTSEE
Nucleotide
Download Length: 2106 bp
>NTDB_id=589738 LPB404_RS02405 WP_219074947.1 471154..473259(+) (clpC) [Streptococcus rubneri strain LPB0404]
ATGAATAACAACTTTAACAATATGGATGATCTTTTCAATCAACTAATGGGAAACATGGGAGGTTTTCGTTCTGAAAGCCG
TCGCTATATGATCAACGGTCGTGAAGTGACACCGGAAGAATTCGCCATATACCGTCAAACGGGTCAACTTCCAAATGATG
GAAGTGAGCAAGTGCAACACCAGCAAGGCAAAGGAATGAAACAAGATGGAATCCTTGCGAAGCTTGGTCGCAACTTGACC
GAAGAAGCACGTGAAGGGAAATTGGATCCAGTCATTGGACGTAACAATGAAATTCAAGAAACGGCTGAAATCTTGTCTCG
TCGTACCAAGAACAATCCGGTCCTTGTCGGGGATGCCGGTGTTGGTAAGACAGCCGTTGTAGAAGGATTGGCTCAAGCCA
TCGTGAATGGAGATGTTCCAGCAGCTATCAAGAACAAAGAAATCATCTCGATTGATATTTCTGGTCTAGAAGCTGGTACG
CAATACCGTGGTAGCTTCGAAGAAAATATCCAAAATATGATCCAAGAAGTCAAAGCAATGGGCAATGTCATCCTCTTCTT
TGATGAAATCCACCAAATTCTTGGTGCAGGTAGCACAGGAGATGGACAAGGATCTAAAGGTCTTGCGGATATCTTGAAAC
CAGCTCTTTCTCGTGGTGAATTAACCGTGATTGGGGCAACTACTCAAGATGAATACCGTAACACCATTTTGAAAAACGCT
GCCCTTGCTCGTCGTTTCAACGAAGTTAAGGTCAATGCTCCTTCTGCTGAAGATACCTTCAAGATTCTCCAAGGGATCCG
TGACCTTTATGAAAAACACCACAATGTTGTCTTGCCAGATGAAGTCTTGAAAGCAGCAGTTGATTATTCTGTTCAATACA
TTCCACAACGTAGCTTGCCTGATAAGGCAATCGACTTGGTCGACGTGACAGCTGCTCACTTGGCGGCTCAACACCCAGTA
ACAGATGTACATGCAGTTGAGCACGAAATCCAAGCGGAAAAAAACAAACAAGAAGAAGCTGCAGCTAAAGAAGACTATGA
AGCAGCCCTTAATGCTAAGATTCGTATCGAAGAACTGGAAAAACAAATTGCTAACCATACGGAAGACCATAAAGTAACAG
CAACGATCAACGATGTGGCTGAATCAGTAGAACGGATGACAGGTATTCCAGTATCTCAAATGGGTGCAACTGATATCGAA
CGTTTGAAAGATATGGGTCACCGTTTGCAAACCAAAGTTATCGGTCAAGACAAGGCCGTTGAAGCTGTTGCAAAAGCCAT
TCGTCGGAACCGTGCAGGCTTTGACGAAGGCAATCGTCCAATCGGTAGCTTCCTCTTTGTAGGACCTACTGGTGTCGGTA
AGACTGAGTTGGCTAAACAATTGGCCCTTGATATGTTCGGTACCAAAGATGCCATCATCCGTTTGGACATGTCAGAATAC
AGTGATCGTACAGCCGTTTCTAAATTAATTGGTACCACTGCTGGTTATGTAGGTTACGATGACAACAACAATACCTTGAC
AGAACGTGTCCGTCGCAATCCTTACTCTATCGTCCTTCTTGACGAGATTGAAAAGGCAGATCCTCAAGTGATCACACTTC
TCCTTCAAGTCTTGGATGATGGTCGTTTGACAGACGGTCAAGGGAACACGGTCAACTTCAAGAATACGGTCATTATCGCT
ACTTCAAACGCTGGCTTTGGTTATGAAGCCAACTTGACAGAAGATGCGGACAAACCAGAACTCATGGATCGTTTGAAACC
ATTCTTCCGTCCAGAATTCCTCAACCGCTTCAATGCTGTCATCGAGTTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTGGTAGAAGTGAACAAAACGCTTGCTAAGAAAGACATTGATTTGTTAGTGAGTGATGCTGCTAAA
GAATATATGACTGAAGAAGGTTACGATGAAGTCATGGGTGTTCGTCCACTCCGTCGGGTCGTTGAACAACAAATCCGTGA
TAAGGTGACAGACTTCCACTTGGATCACCTTGATGCAAAACACTTGTTGGCAGATATGGAAGATGGAGAATTGGTTATTA
AAGAGAATGGAACCTCAGAAGAATAA
ATGAATAACAACTTTAACAATATGGATGATCTTTTCAATCAACTAATGGGAAACATGGGAGGTTTTCGTTCTGAAAGCCG
TCGCTATATGATCAACGGTCGTGAAGTGACACCGGAAGAATTCGCCATATACCGTCAAACGGGTCAACTTCCAAATGATG
GAAGTGAGCAAGTGCAACACCAGCAAGGCAAAGGAATGAAACAAGATGGAATCCTTGCGAAGCTTGGTCGCAACTTGACC
GAAGAAGCACGTGAAGGGAAATTGGATCCAGTCATTGGACGTAACAATGAAATTCAAGAAACGGCTGAAATCTTGTCTCG
TCGTACCAAGAACAATCCGGTCCTTGTCGGGGATGCCGGTGTTGGTAAGACAGCCGTTGTAGAAGGATTGGCTCAAGCCA
TCGTGAATGGAGATGTTCCAGCAGCTATCAAGAACAAAGAAATCATCTCGATTGATATTTCTGGTCTAGAAGCTGGTACG
CAATACCGTGGTAGCTTCGAAGAAAATATCCAAAATATGATCCAAGAAGTCAAAGCAATGGGCAATGTCATCCTCTTCTT
TGATGAAATCCACCAAATTCTTGGTGCAGGTAGCACAGGAGATGGACAAGGATCTAAAGGTCTTGCGGATATCTTGAAAC
CAGCTCTTTCTCGTGGTGAATTAACCGTGATTGGGGCAACTACTCAAGATGAATACCGTAACACCATTTTGAAAAACGCT
GCCCTTGCTCGTCGTTTCAACGAAGTTAAGGTCAATGCTCCTTCTGCTGAAGATACCTTCAAGATTCTCCAAGGGATCCG
TGACCTTTATGAAAAACACCACAATGTTGTCTTGCCAGATGAAGTCTTGAAAGCAGCAGTTGATTATTCTGTTCAATACA
TTCCACAACGTAGCTTGCCTGATAAGGCAATCGACTTGGTCGACGTGACAGCTGCTCACTTGGCGGCTCAACACCCAGTA
ACAGATGTACATGCAGTTGAGCACGAAATCCAAGCGGAAAAAAACAAACAAGAAGAAGCTGCAGCTAAAGAAGACTATGA
AGCAGCCCTTAATGCTAAGATTCGTATCGAAGAACTGGAAAAACAAATTGCTAACCATACGGAAGACCATAAAGTAACAG
CAACGATCAACGATGTGGCTGAATCAGTAGAACGGATGACAGGTATTCCAGTATCTCAAATGGGTGCAACTGATATCGAA
CGTTTGAAAGATATGGGTCACCGTTTGCAAACCAAAGTTATCGGTCAAGACAAGGCCGTTGAAGCTGTTGCAAAAGCCAT
TCGTCGGAACCGTGCAGGCTTTGACGAAGGCAATCGTCCAATCGGTAGCTTCCTCTTTGTAGGACCTACTGGTGTCGGTA
AGACTGAGTTGGCTAAACAATTGGCCCTTGATATGTTCGGTACCAAAGATGCCATCATCCGTTTGGACATGTCAGAATAC
AGTGATCGTACAGCCGTTTCTAAATTAATTGGTACCACTGCTGGTTATGTAGGTTACGATGACAACAACAATACCTTGAC
AGAACGTGTCCGTCGCAATCCTTACTCTATCGTCCTTCTTGACGAGATTGAAAAGGCAGATCCTCAAGTGATCACACTTC
TCCTTCAAGTCTTGGATGATGGTCGTTTGACAGACGGTCAAGGGAACACGGTCAACTTCAAGAATACGGTCATTATCGCT
ACTTCAAACGCTGGCTTTGGTTATGAAGCCAACTTGACAGAAGATGCGGACAAACCAGAACTCATGGATCGTTTGAAACC
ATTCTTCCGTCCAGAATTCCTCAACCGCTTCAATGCTGTCATCGAGTTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTGGTAGAAGTGAACAAAACGCTTGCTAAGAAAGACATTGATTTGTTAGTGAGTGATGCTGCTAAA
GAATATATGACTGAAGAAGGTTACGATGAAGTCATGGGTGTTCGTCCACTCCGTCGGGTCGTTGAACAACAAATCCGTGA
TAAGGTGACAGACTTCCACTTGGATCACCTTGATGCAAAACACTTGTTGGCAGATATGGAAGATGGAGAATTGGTTATTA
AAGAGAATGGAACCTCAGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.506 |
100 |
0.486 |
| clpE | Streptococcus mutans UA159 |
47.869 |
100 |
0.481 |
| clpE | Streptococcus pneumoniae Rx1 |
48.457 |
92.439 |
0.448 |
| clpE | Streptococcus pneumoniae D39 |
48.457 |
92.439 |
0.448 |
| clpE | Streptococcus pneumoniae R6 |
48.457 |
92.439 |
0.448 |
| clpE | Streptococcus pneumoniae TIGR4 |
48.457 |
92.439 |
0.448 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.833 |
92.439 |
0.424 |
| clpC | Streptococcus pneumoniae D39 |
42.615 |
92.725 |
0.395 |
| clpC | Streptococcus pneumoniae Rx1 |
42.615 |
92.725 |
0.395 |
| clpC | Streptococcus pneumoniae TIGR4 |
42.462 |
92.725 |
0.394 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.654 |
90.3 |
0.385 |
| clpC | Streptococcus thermophilus LMD-9 |
43.296 |
88.302 |
0.382 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.134 |
88.302 |
0.381 |
| clpC | Streptococcus mutans UA159 |
42.233 |
88.16 |
0.372 |