Detailed information NTG0589737

Bioinformatically predicted

Overview

• Name: amiA3
• Type: Regulator
• Locus tag: LPB404_RS02315
• Genome accession: NZ_CP079821
• Coordinates: 451132..453114 (+)
• Length: 660 a.a.
• NCBI ID: WP_219074942.1
• Uniprot ID: -
• Organism: Streptococcus rubneri strain LPB0404
• Function: binding to XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	438925..450247	451132..453114	flank	885

Gene organization within MGE regions

Location: 438925..453114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB404_RS02245 (LPB404_02245)	-	438925..439896 (+)	972	WP_219074934.1	sugar-binding transcriptional regulator	-
LPB404_RS02250 (LPB404_02250)	-	440064..440387 (+)	324	WP_006595062.1	PTS lactose/cellobiose transporter subunit IIA	-
LPB404_RS02255 (LPB404_02255)	-	440398..440709 (+)	312	WP_006595061.1	PTS sugar transporter subunit IIB	-
LPB404_RS02260 (LPB404_02260)	-	440721..442022 (+)	1302	WP_219074935.1	PTS sugar transporter subunit IIC	-
LPB404_RS02265 (LPB404_02265)	-	442164..444602 (+)	2439	WP_219074936.1	glycyl radical protein	-
LPB404_RS02270 (LPB404_02270)	-	444618..445286 (+)	669	WP_006595058.1	fructose-6-phosphate aldolase	-
LPB404_RS02275 (LPB404_02275)	-	445301..446392 (+)	1092	WP_048788743.1	glycerol dehydrogenase	-
LPB404_RS02280 (LPB404_02280)	-	446582..447328 (-)	747	WP_219074937.1	ABC transporter permease	-
LPB404_RS02285 (LPB404_02285)	-	447321..448154 (-)	834	WP_257573049.1	ABC transporter ATP-binding protein	-
LPB404_RS02290 (LPB404_02290)	-	448151..448381 (-)	231	WP_120701314.1	hypothetical protein	-
LPB404_RS02295 (LPB404_02295)	-	448612..449535 (-)	924	WP_219074938.1	XRE family transcriptional regulator	-
LPB404_RS02300 (LPB404_02300)	-	449823..449963 (+)	141	WP_219074939.1	bacteriocin	-
LPB404_RS02305 (LPB404_02305)	-	450026..450247 (+)	222	WP_219074940.1	hypothetical protein	-
LPB404_RS02310 (LPB404_02310)	-	450266..450940 (+)	675	WP_219074941.1	CPBP family intramembrane glutamic endopeptidase	-
LPB404_RS02315 (LPB404_02315)	amiA3	451132..453114 (+)	1983	WP_219074942.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 660 a.a.
• Molecular weight: 73460.22 Da
• Isoelectric Point: 4.7101

>NTDB_id=589737 LPB404_RS02315 WP_219074942.1 451132..453114(+) (amiA3) [Streptococcus rubneri strain LPB0404]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSDNQVFSYVYTQDPDTLDYSLSNKKSTSEFTGNAVDGLLEVDKYGNLIP
SLAKDWTVSKDGLTYTYKLRKGVKWVTAEGEEFGEVKAQDFVTGLQHAADKKSSALYLVQQSIKGLDDYVSGKTKDFSTV
GIKAVDDYTVQYTLNQPESFWNSKTTMGILMPVNKEFLDSKGDGYGQGTNPSSILYCGPYLIKAITSKSVVTLEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDYTIARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAIMFAFNRKAYVAQANGEASADKVIRNTFTPPNFVQIDGKDFGESVEKNLEEYGDEWKG
VSVEDGKDTLYNPTKAKEEFAKAKEALQGQGVEFPIHLDLPVSSTYTEGVKQAQSFKQSIESTLGAENVVIDLNMVSEDD
LNRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITNSKNGENANSYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNDRYEKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYTAAFAWTGHKGQTFNYKYLELQDKVLTTKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide

• Length: 1983 bp

>NTDB_id=589737 LPB404_RS02315 WP_219074942.1 451132..453114(+) (amiA3) [Streptococcus rubneri strain LPB0404]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTGCTCTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGACAACCAGGTCTTTAGTTATGTCTATACTCAAGATCCGGATACTTTGGATTATTCACTCTCTA
ATAAGAAGTCGACCTCAGAATTTACAGGTAATGCTGTGGATGGCTTGTTAGAAGTTGACAAATACGGTAACTTAATCCCA
TCTCTTGCGAAGGATTGGACTGTTTCAAAAGATGGTCTGACCTATACCTATAAACTTCGTAAAGGGGTTAAATGGGTGAC
CGCTGAAGGGGAAGAATTCGGAGAAGTTAAGGCCCAAGACTTTGTGACGGGGCTTCAGCACGCAGCGGACAAGAAGTCTT
CGGCCCTCTATCTCGTCCAACAATCTATCAAAGGATTGGATGATTATGTCTCAGGGAAAACCAAAGACTTCTCAACAGTT
GGTATCAAAGCTGTCGATGACTATACGGTTCAATACACCTTGAACCAACCAGAAAGTTTCTGGAATTCAAAAACCACCAT
GGGCATTTTGATGCCAGTCAATAAAGAATTCTTAGATTCTAAGGGAGATGGCTACGGTCAAGGCACGAACCCTTCTAGTA
TTCTTTATTGTGGTCCTTATTTGATCAAAGCCATCACATCTAAATCTGTTGTGACGCTTGAAAAGAACCCAACCTATTGG
GATGCTGATAATGTAAAAATTTCTAAGGTTAAGCTGACCTATTATGATGGACAAGATTCAGAATCTTTGATCCGTGGATT
TGATAACGGAGACTATACCATTGCCCGTGTCTTCCCAAATGGCTCTAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATTGTCTTCAGTGACCAAGGATCCTCTACTTACAACTTGTCCTTCAATATTGACCGTCAAGCTTATGAGATTACGACG
AAAACGACAGATGCTCAAAAGAGCTCAACCAAGAAAGCAATCTTGAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
CAACCGCAAGGCCTATGTAGCGCAAGCCAATGGGGAAGCATCTGCAGACAAGGTCATCCGCAACACCTTCACTCCTCCAA
ACTTTGTTCAAATTGATGGCAAAGATTTCGGTGAGTCTGTAGAGAAAAACTTAGAAGAATATGGTGATGAATGGAAAGGT
GTTTCTGTCGAAGATGGAAAAGATACCCTTTACAATCCAACCAAGGCCAAGGAAGAGTTTGCCAAGGCCAAAGAAGCTCT
TCAAGGCCAAGGGGTAGAGTTCCCGATTCATTTGGACCTCCCTGTTTCATCCACCTATACAGAAGGAGTCAAGCAAGCTC
AATCCTTTAAACAGTCGATCGAATCTACCCTAGGAGCAGAAAATGTCGTCATCGACTTGAATATGGTATCTGAGGACGAT
CTTAATCGAGTGACCTACTTTGCTGAAAATGCTTCTCAACAAGACTGGGATTTGAACAACAACTTGGGTTGGGGTCCAGA
CTATACCGATCCATCTTCTTACCTAGATATCACAAACTCTAAGAATGGTGAAAATGCAAATTCTTACTTCGGATTTGATG
CTGGTACTAATAACGCAGCTGCTAAAGAAGCTGGTTTTGATGAATACGATCAATTGATTGAAGATGCACATAATGAAACA
AAAGATGTCAATGACCGCTATGAAAAATATGCTAAGGCTCAGGCTTGGTTGACTGATAGTGCCCTCTTAATCCCGATTCA
TTCAGATGGTGCCTCTCCAGGTGTTCGTAAGACAGTTCCATACACAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAA
CCTTCAACTACAAGTACTTGGAATTGCAAGACAAAGTTTTGACAACCAAGGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAAGACTAG

Domains

Predicted by InterproScan.

• Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5) (78-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiA3	Streptococcus thermophilus LMD-9	55.068	100	0.552
amiA3	Streptococcus thermophilus LMG 18311	54.917	100	0.55
amiA	Streptococcus salivarius strain HSISS4	55	100	0.55