Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | LPB404_RS01935 | Genome accession | NZ_CP079821 |
| Coordinates | 376336..377289 (+) | Length | 317 a.a. |
| NCBI ID | WP_120701351.1 | Uniprot ID | - |
| Organism | Streptococcus rubneri strain LPB0404 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 371336..382289
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB404_RS01895 (LPB404_01895) | - | 372102..372479 (+) | 378 | WP_219074901.1 | DUF1033 family protein | - |
| LPB404_RS01900 (LPB404_01900) | comYA | 372584..373543 (+) | 960 | WP_219074902.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LPB404_RS01905 (LPB404_01905) | comYB | 373467..374489 (+) | 1023 | WP_257573088.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LPB404_RS01910 (LPB404_01910) | comGC/cglC | 374486..374803 (+) | 318 | WP_219074903.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LPB404_RS01915 (LPB404_01915) | comGD/cglD | 374793..375197 (+) | 405 | WP_219075204.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LPB404_RS01920 (LPB404_01920) | comGE | 375163..375456 (+) | 294 | WP_219074904.1 | competence type IV pilus minor pilin ComGE | - |
| LPB404_RS01925 (LPB404_01925) | comGF/cglF | 375440..375892 (+) | 453 | WP_219075203.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LPB404_RS01930 (LPB404_01930) | comGG | 375921..376304 (+) | 384 | WP_374030902.1 | competence type IV pilus minor pilin ComGG | - |
| LPB404_RS01935 (LPB404_01935) | comYH | 376336..377289 (+) | 954 | WP_120701351.1 | class I SAM-dependent methyltransferase | Machinery gene |
| LPB404_RS01940 (LPB404_01940) | - | 377338..378534 (+) | 1197 | WP_219074906.1 | acetate kinase | - |
| LPB404_RS01945 (LPB404_01945) | - | 378687..379361 (+) | 675 | WP_244917016.1 | CPBP family intramembrane glutamic endopeptidase | - |
| LPB404_RS01950 (LPB404_01950) | folP | 379520..380476 (+) | 957 | WP_257573047.1 | dihydropteroate synthase | - |
| LPB404_RS01955 (LPB404_01955) | - | 380493..381797 (+) | 1305 | WP_219074908.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36022.95 Da Isoelectric Point: 4.4354
>NTDB_id=589733 LPB404_RS01935 WP_120701351.1 376336..377289(+) (comYH) [Streptococcus rubneri strain LPB0404]
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLKDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDKVDVLEIGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VKFAQGDAVRPQVLKESDVIISDLPVGYYPDDAIASRYQVASPQGHTYAHHLLIEQSLKYLKPGGIAIFLAPNDLLTSEQ
SPLLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQNQEDVMKFRESFQNWNKESEI
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLKDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDKVDVLEIGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VKFAQGDAVRPQVLKESDVIISDLPVGYYPDDAIASRYQVASPQGHTYAHHLLIEQSLKYLKPGGIAIFLAPNDLLTSEQ
SPLLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQNQEDVMKFRESFQNWNKESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=589733 LPB404_RS01935 WP_120701351.1 376336..377289(+) (comYH) [Streptococcus rubneri strain LPB0404]
ATGAATTTCGAAAAAATTGAGAAAGCCTATGGCTATCTATTAGAAAATACCCAAACCATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCAATCTATCTGGATGGGCAGACTGAGTTGACTCTAGTGAAGGAAAACAACC
AGCGACTGAAGGACTTGAATTTGAACAAAGAAGAGTGGCGTCGCTCCTTCCAATATCTTTTGATGAAGGCGGCCCAAACA
GAGCCCCTACAAGCCAATCACCAATTTACCCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTAGCTAG
TTCTGATAAAGTAGATGTGCTAGAAATTGGAAGCGGAACAGGAAACTTAGCCCAAACCTTAATGAACAACTGCCAGCGCT
CGCTAGATTATTTGGGCTTGGAAATCGATGATCTGTTGATTGATCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAAGTTCGCCCAAGGTGATGCGGTTCGTCCACAGGTTTTGAAAGAGAGTGATGTGATTATCAGTGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCAAGTCGTTATCAGGTCGCTTCCCCTCAGGGCCACACCTATGCCCATCATTTATTAA
TCGAACAATCGTTAAAATACTTAAAGCCGGGTGGTATCGCTATTTTTCTAGCTCCGAATGATCTGTTGACGAGCGAGCAG
AGCCCTCTCTTGAAAAAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTTACCTTGCCAGAGAACCTCTTTCGATC
AGCTAATCTAGCAAAAACCATCTTTGTTTTGCGCAAGCAAGAAGAAGCAGTGGTCCAACCATTTGTCTATCCCTTAACCG
ATTTGCAAAATCAGGAAGACGTCATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
ATGAATTTCGAAAAAATTGAGAAAGCCTATGGCTATCTATTAGAAAATACCCAAACCATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCAATCTATCTGGATGGGCAGACTGAGTTGACTCTAGTGAAGGAAAACAACC
AGCGACTGAAGGACTTGAATTTGAACAAAGAAGAGTGGCGTCGCTCCTTCCAATATCTTTTGATGAAGGCGGCCCAAACA
GAGCCCCTACAAGCCAATCACCAATTTACCCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTAGCTAG
TTCTGATAAAGTAGATGTGCTAGAAATTGGAAGCGGAACAGGAAACTTAGCCCAAACCTTAATGAACAACTGCCAGCGCT
CGCTAGATTATTTGGGCTTGGAAATCGATGATCTGTTGATTGATCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAAGTTCGCCCAAGGTGATGCGGTTCGTCCACAGGTTTTGAAAGAGAGTGATGTGATTATCAGTGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCAAGTCGTTATCAGGTCGCTTCCCCTCAGGGCCACACCTATGCCCATCATTTATTAA
TCGAACAATCGTTAAAATACTTAAAGCCGGGTGGTATCGCTATTTTTCTAGCTCCGAATGATCTGTTGACGAGCGAGCAG
AGCCCTCTCTTGAAAAAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTTACCTTGCCAGAGAACCTCTTTCGATC
AGCTAATCTAGCAAAAACCATCTTTGTTTTGCGCAAGCAAGAAGAAGCAGTGGTCCAACCATTTGTCTATCCCTTAACCG
ATTTGCAAAATCAGGAAGACGTCATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.048 |
99.369 |
0.587 |
| comYH | Streptococcus mutans UA159 |
58.73 |
99.369 |
0.584 |