Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   LPB404_RS01915 Genome accession   NZ_CP079821
Coordinates   374793..375197 (+) Length   134 a.a.
NCBI ID   WP_219075204.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369793..380197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS01895 (LPB404_01895) - 372102..372479 (+) 378 WP_219074901.1 DUF1033 family protein -
  LPB404_RS01900 (LPB404_01900) comYA 372584..373543 (+) 960 WP_219074902.1 competence type IV pilus ATPase ComGA Machinery gene
  LPB404_RS01905 (LPB404_01905) comYB 373467..374489 (+) 1023 WP_257573088.1 competence type IV pilus assembly protein ComGB Machinery gene
  LPB404_RS01910 (LPB404_01910) comGC/cglC 374486..374803 (+) 318 WP_219074903.1 competence type IV pilus major pilin ComGC Machinery gene
  LPB404_RS01915 (LPB404_01915) comGD/cglD 374793..375197 (+) 405 WP_219075204.1 competence type IV pilus minor pilin ComGD Machinery gene
  LPB404_RS01920 (LPB404_01920) comGE 375163..375456 (+) 294 WP_219074904.1 competence type IV pilus minor pilin ComGE -
  LPB404_RS01925 (LPB404_01925) comGF/cglF 375440..375892 (+) 453 WP_219075203.1 competence type IV pilus minor pilin ComGF Machinery gene
  LPB404_RS01930 (LPB404_01930) comGG 375921..376304 (+) 384 WP_374030902.1 competence type IV pilus minor pilin ComGG -
  LPB404_RS01935 (LPB404_01935) comYH 376336..377289 (+) 954 WP_120701351.1 class I SAM-dependent methyltransferase Machinery gene
  LPB404_RS01940 (LPB404_01940) - 377338..378534 (+) 1197 WP_219074906.1 acetate kinase -
  LPB404_RS01945 (LPB404_01945) - 378687..379361 (+) 675 WP_244917016.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14958.26 Da        Isoelectric Point: 6.7209

>NTDB_id=589731 LPB404_RS01915 WP_219075204.1 374793..375197(+) (comGD/cglD) [Streptococcus rubneri strain LPB0404]
MQIKAFTLLESLLTLGVVSLLCWLLAGSVHQAFGQVEETLFFSEFERVYQETQKMSIAKEERTSLSIDHIGVHSPYQELA
LPKGVELIKEKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTAPR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=589731 LPB404_RS01915 WP_219075204.1 374793..375197(+) (comGD/cglD) [Streptococcus rubneri strain LPB0404]
TTGCAGATTAAGGCTTTCACCCTTCTAGAGAGCTTACTAACTCTAGGTGTCGTCAGCCTTCTATGCTGGCTGCTAGCTGG
GTCAGTCCATCAAGCCTTTGGGCAGGTGGAAGAAACATTGTTTTTCTCAGAATTTGAACGGGTCTATCAAGAGACACAAA
AGATGAGTATTGCAAAAGAGGAGAGAACTTCCCTCTCCATCGACCATATTGGGGTTCATAGTCCCTATCAAGAATTGGCG
CTTCCAAAAGGGGTGGAACTGATTAAAGAGAAGCAACTGACGTTTGATCCAGCAGGAGGCAATTCAAGCTTGACCAAGAT
TCAATTTCAGACAGAGAAAGAGGTGGTGACCTATCAGTTGGCAATTGGGAATGGAAAAATTAAGAAATCGACAGCTCCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

53.488

96.269

0.515
  comGD/cglD Streptococcus pneumoniae Rx1

53.543

94.776

0.507
  comGD/cglD Streptococcus pneumoniae D39

53.543

94.776

0.507
  comGD/cglD Streptococcus pneumoniae R6

53.543

94.776

0.507
  comGD/cglD Streptococcus pneumoniae TIGR4

53.543

94.776

0.507
  comGD/cglD Streptococcus mitis SK321

52.756

94.776

0.5
  comYD Streptococcus gordonii str. Challis substr. CH1

48.092

97.761

0.47
  comYD Streptococcus mutans UA140

47.692

97.015

0.463
  comYD Streptococcus mutans UA159

47.692

97.015

0.463