Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPB404_RS00800 Genome accession   NZ_CP079821
Coordinates   177874..178635 (+) Length   253 a.a.
NCBI ID   WP_219074816.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 172874..183635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS00770 (LPB404_00770) comE/comE2 173370..174122 (-) 753 WP_154856954.1 response regulator transcription factor Regulator
  LPB404_RS09855 - 174123..175442 (-) 1320 WP_257573037.1 GHKL domain-containing protein -
  LPB404_RS00780 (LPB404_00780) - 175442..175585 (-) 144 WP_219074813.1 bacteriocin -
  LPB404_RS00790 (LPB404_00790) rlmH 175948..176427 (-) 480 WP_219074814.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LPB404_RS00795 (LPB404_00795) htrA 176630..177808 (+) 1179 WP_219074815.1 S1C family serine protease Regulator
  LPB404_RS00800 (LPB404_00800) spo0J 177874..178635 (+) 762 WP_219074816.1 ParB/RepB/Spo0J family partition protein Regulator
  LPB404_RS00805 (LPB404_00805) dnaA 178914..180254 (+) 1341 WP_374030896.1 chromosomal replication initiator protein DnaA -
  LPB404_RS00810 (LPB404_00810) dnaN 180415..181551 (+) 1137 WP_006595327.1 DNA polymerase III subunit beta -
  LPB404_RS00815 (LPB404_00815) - 181615..181806 (+) 192 WP_061564542.1 DUF951 domain-containing protein -
  LPB404_RS00820 (LPB404_00820) - 181994..182488 (-) 495 WP_125374716.1 DUF1307 domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29258.86 Da        Isoelectric Point: 8.3629

>NTDB_id=589723 LPB404_RS00800 WP_219074816.1 177874..178635(+) (spo0J) [Streptococcus rubneri strain LPB0404]
MEKIDIIDVKQIRTNPFQPRQTFVQEKLEELAASIKENGLIQPIIVRKSSIVGYELLAGERRYRAAQMAGFKEIPAIIRD
LSDDDMIKQAIIENLQREDLNPIEEAESYQHLIDKGATHEEIAQFMGKSRPYISNMVRLLHLSPAVKEAIKNEKISQGHA
RILVPLKEELQIYWLERILKEGLSVRSLEEKVGQKKKTPSKKEKELFLAQEENRLKKILGTEVEIHLTKQEKGSIHISFN
NLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=589723 LPB404_RS00800 WP_219074816.1 177874..178635(+) (spo0J) [Streptococcus rubneri strain LPB0404]
ATGGAAAAAATTGATATTATTGACGTAAAGCAAATACGAACCAATCCTTTTCAACCTCGTCAAACCTTTGTACAAGAGAA
ATTAGAAGAACTCGCAGCCTCAATCAAAGAAAATGGATTAATCCAACCTATTATTGTTCGAAAATCTTCTATTGTTGGTT
ATGAACTACTTGCTGGAGAAAGACGCTACCGAGCAGCTCAAATGGCTGGTTTCAAAGAAATCCCTGCGATTATAAGAGAT
TTATCAGATGATGACATGATCAAACAAGCCATTATCGAAAATTTACAAAGAGAAGATTTGAATCCAATTGAAGAGGCAGA
ATCCTACCAACATCTTATTGATAAAGGGGCTACCCATGAAGAAATTGCTCAATTTATGGGAAAATCTCGTCCTTACATCA
GCAACATGGTCCGTTTACTTCATCTCTCACCAGCTGTTAAAGAAGCTATCAAAAACGAGAAAATTTCACAAGGACATGCC
CGCATTTTAGTTCCCTTAAAGGAAGAGCTACAAATCTATTGGCTGGAACGAATTCTTAAAGAAGGACTAAGCGTTCGTAG
TTTGGAAGAAAAGGTTGGTCAAAAAAAGAAAACACCAAGTAAAAAAGAGAAGGAACTCTTTTTAGCACAGGAAGAAAATA
GACTAAAAAAGATTCTAGGAACCGAAGTTGAAATCCATCTGACGAAACAAGAAAAAGGAAGTATTCATATTTCATTTAAC
AATCTTGATGAATACCAACGAATTATTAACAGTCTCAAATGA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.383

100

0.514