Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB402_RS07690 Genome accession   NZ_CP079820
Coordinates   1605908..1606195 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1607125..1607634 1605908..1606195 flank 930


Gene organization within MGE regions


Location: 1605908..1607634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS07690 (LPB402_07695) comE 1605908..1606195 (+) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene
  LPB402_RS07695 (LPB402_07700) comP 1606390..1606884 (+) 495 WP_107769082.1 type IV pilin protein Machinery gene
  LPB402_RS07700 (LPB402_07705) - 1606981..1607634 (-) 654 Protein_1500 IS1595 family transposase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589701 LPB402_RS07690 WP_036472233.1 1605908..1606195(+) (comE) [Neisseria sicca ATCC 29256]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589701 LPB402_RS07690 WP_036472233.1 1605908..1606195(+) (comE) [Neisseria sicca ATCC 29256]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAATATCAATACCGCGTC
TTCTGCCGAACTGGAGGCTTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4