Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LPB400_RS00410 Genome accession   NZ_CP079818
Coordinates   81022..81516 (-) Length   164 a.a.
NCBI ID   WP_107769082.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 80272..80781 81022..81516 flank 241


Gene organization within MGE regions


Location: 80272..81516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS00405 (LPB400_00405) - 80272..80925 (+) 654 Protein_77 IS1595 family transposase -
  LPB400_RS00410 (LPB400_00410) comP 81022..81516 (-) 495 WP_107769082.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17950.99 Da        Isoelectric Point: 10.0610

>NTDB_id=589621 LPB400_RS00410 WP_107769082.1 81022..81516(-) (comP) [Neisseria perflava strain LPB0400]
MYLKAFDGKRNGAAVQRGYSLIQLLVVMLLVSILATAALTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMNGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKVKGSCTDGEEIFRGNDAECK
PFTG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=589621 LPB400_RS00410 WP_107769082.1 81022..81516(-) (comP) [Neisseria perflava strain LPB0400]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAGCTGTACAGAGGGGCTACTCCTTGATACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATATTGGCGACGGCGGCATTGACTGCCTATCGGGAGTCAGTCCGTTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGCGGTTTCTGCATTCGGATGAACGGTCAGGCTAAGGGGATCCTGGAAGG
GAAGTTTACCCTGAAGGCGGTGGCTCTGGACAGGGAGGCGGAGCCGAGAGTATTACGCTTGAACGAGTCGTTGACGGCGG
TAGTGTGCGGGAAGATGAAGGTGAAGGGAAGCTGTACGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTACGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

93.902

100

0.939
  comP Neisseria meningitidis 8013

51.02

89.634

0.457
  comP Neisseria gonorrhoeae MS11

51.034

88.415

0.451