Detailed information NTG0589554

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV822_RS04565
• Genome accession: NZ_CP079801
• Coordinates: 986816..987688 (+)
• Length: 290 a.a.
• NCBI ID: WP_238872583.1
• Uniprot ID: -
• Organism: Halopseudomonas maritima strain RR6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	977085..986811	986816..987688	flank	5

Gene organization within MGE regions

Location: 977085..987688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV822_RS04520 (HV822_04525)	-	977085..978083 (-)	999	WP_238872577.1	alpha-2,8-polysialyltransferase family protein	-
HV822_RS04525 (HV822_04530)	-	978099..979397 (-)	1299	WP_238872578.1	lipopolysaccharide biosynthesis protein	-
HV822_RS04530 (HV822_04535)	-	979372..980313 (-)	942	WP_238872579.1	glycosyltransferase family 2 protein	-
HV822_RS04535 (HV822_04540)	-	980329..981177 (-)	849	WP_238872580.1	glycosyltransferase family 2 protein	-
HV822_RS04540 (HV822_04545)	-	981174..983093 (-)	1920	WP_238872581.1	hypothetical protein	-
HV822_RS18150 (HV822_04550)	-	983168..983578 (-)	411	WP_275419408.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HV822_RS04555 (HV822_04555)	pilB	983848..985548 (+)	1701	WP_238873536.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HV822_RS04560 (HV822_04560)	pilC	985552..986811 (+)	1260	WP_238872582.1	type II secretion system F family protein	Machinery gene
HV822_RS04565 (HV822_04565)	pilD	986816..987688 (+)	873	WP_238872583.1	A24 family peptidase	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31883.97 Da
• Isoelectric Point: 6.8360

>NTDB_id=589554 HV822_RS04565 WP_238872583.1 986816..987688(+) (pilD) [Halopseudomonas maritima strain RR6]
MQFSSYLASTPLAFILLAGLLGLVIGSFLNVVILRVPRMLEIEWQQQAREILEPDREHAPPATYNLILPHSHCPKCKTEI
KAWQNIPVISYLLLRGRCGNCEEPISLRYPAIELLTAGLSMLVAWQMGFGLAAAGMLVLTWALICLSMIDADTQLLPDII
VLPLLWLGLILNSFGVYTDLNTALWGAVAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLV
GAILGLIILKARGANNSTPLPFGPYLAIAGWIALIWGETITSHYLRFAGF

Nucleotide

• Length: 873 bp

>NTDB_id=589554 HV822_RS04565 WP_238872583.1 986816..987688(+) (pilD) [Halopseudomonas maritima strain RR6]
ATGCAGTTCAGCTCATATTTGGCCAGCACACCGCTGGCCTTTATTTTGCTCGCCGGCCTCCTGGGCCTGGTCATTGGCAG
CTTTCTCAACGTGGTTATTCTGCGCGTGCCGCGCATGCTTGAGATTGAATGGCAGCAGCAGGCGCGGGAGATTCTTGAGC
CGGACCGCGAGCACGCACCGCCAGCAACCTACAACCTGATCCTGCCACACTCGCATTGCCCCAAGTGCAAGACCGAGATC
AAGGCCTGGCAGAACATACCGGTCATCAGCTACCTCCTGCTGCGCGGCCGCTGCGGCAACTGCGAAGAACCGATCAGCCT
GCGCTACCCGGCGATTGAATTGCTCACTGCAGGGCTTTCCATGCTGGTTGCCTGGCAAATGGGCTTTGGTCTGGCAGCCG
CGGGTATGCTGGTGCTCACTTGGGCGCTGATCTGCCTAAGCATGATTGACGCCGACACCCAGCTGCTGCCGGACATCATC
GTCCTGCCTTTGCTGTGGCTGGGCCTGATCCTCAACAGCTTTGGCGTTTACACCGACCTCAACACAGCCCTTTGGGGTGC
AGTCGCAGGCTACCTGAGTCTCTGGTCGGTGTACTGGCTGTTCAAGCTGATTACCGGTAAGGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTGGCCATGCTGGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTATCTTCTCTGGTC
GGCGCCATTCTGGGCCTGATCATTCTCAAGGCGCGCGGTGCTAACAACAGCACTCCCCTGCCCTTTGGCCCGTACCTGGC
CATCGCCGGCTGGATCGCGCTGATCTGGGGTGAGACAATCACCAGCCATTATTTGCGTTTCGCCGGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.093	96.897	0.524
pilD	Acinetobacter nosocomialis M2	54.093	96.897	0.524
pilD	Vibrio campbellii strain DS40M4	52.536	95.172	0.5
pilD	Vibrio cholerae strain A1552	52.536	95.172	0.5
pilD	Neisseria gonorrhoeae MS11	51.515	91.034	0.469