Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EGT72_RS01115 Genome accession   NZ_CP079792
Coordinates   229526..230947 (-) Length   473 a.a.
NCBI ID   WP_125280621.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 224526..235947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01100 (EGT72_001100) lptG 225586..226656 (+) 1071 WP_125273428.1 LPS export ABC transporter permease LptG -
  EGT72_RS01105 (EGT72_001105) gpmI 226780..228327 (+) 1548 WP_125280623.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  EGT72_RS01110 (EGT72_001110) - 228346..229521 (+) 1176 WP_125280622.1 S41 family peptidase -
  EGT72_RS01115 (EGT72_001115) pilR 229526..230947 (-) 1422 WP_125280621.1 sigma-54 dependent transcriptional regulator Regulator
  EGT72_RS01120 (EGT72_001120) pilS 230963..232531 (-) 1569 WP_125280620.1 ATP-binding protein Regulator
  EGT72_RS01125 (EGT72_001125) - 232554..233189 (-) 636 WP_010325697.1 response regulator -
  EGT72_RS01130 (EGT72_001130) - 233405..234460 (+) 1056 WP_125280619.1 serine hydrolase -
  EGT72_RS01135 (EGT72_001135) thrC 234546..235685 (-) 1140 WP_058868731.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53288.43 Da        Isoelectric Point: 6.4461

>NTDB_id=589501 EGT72_RS01115 WP_125280621.1 229526..230947(-) (pilR) [Acinetobacter johnsonii strain AJ_082]
MEKKPLVLLVDDEQDLCTLMQMSLSRMGIDTHIAYRLQEAVQALKMHQYDACLTDLNLPDGNGLSLVDFIAQNYPNLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNQPISQLHIQEDTLEHRLLIGQSLPIQQLRITLKKIARSQ
APVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHRKGSFTGATQDKQGLILSAHGGSLFLDEI
AELPLTMQVKLLRAVQEKRIRPIGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLYFRIHVMDIVLPALRERGNDIILL
AQYFIQKICQEWDIPVKPLSERAREFLLAQYYPGNVRELRNMMERAITLSDESSIDLPHLQTAPLRPIAQTNYANATQQG
AVSNDQLSHVPSRKLPEEGLELYLEKIEKEILMNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDGEDDSV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=589501 EGT72_RS01115 WP_125280621.1 229526..230947(-) (pilR) [Acinetobacter johnsonii strain AJ_082]
GTGGAAAAAAAACCACTTGTTTTATTGGTGGATGACGAACAAGACTTATGTACACTGATGCAAATGTCTTTAAGTCGGAT
GGGAATTGATACACATATTGCCTATCGCTTACAAGAGGCGGTTCAAGCCCTGAAAATGCATCAATATGATGCCTGTCTAA
CCGATCTGAATTTACCCGATGGTAATGGCCTGAGCTTGGTCGATTTTATTGCTCAAAATTATCCTAATTTGCCCGTTGCA
GTGCTGACTGCTTACGGCAATATGGATATTGCGATTGCAGCACTTAAAGCTGGTGCTTTTGATTTTGTCAGCAAACCGAT
CAACCAAAAACATTTAGAGCAACTTTTACAAAAAGCCTTTAATCAGCCCATCAGTCAGCTGCATATCCAAGAAGATACGC
TTGAACATCGTCTGCTGATTGGTCAGTCCCTTCCTATTCAACAGCTACGCATCACCTTAAAGAAAATTGCACGCTCGCAA
GCCCCTGTCTTTATTACGGGTGAATCAGGCACTGGCAAAGAAGTGGTGGCGAATCTGGTACATCGCCTGAGCAATCGCAA
TGAAGGGCCATTTATTGCCATTAACTGCGGTGCTATACCGACCGAACTGATGGAAAGTGAATTATTTGGACACCGTAAAG
GCAGCTTCACAGGAGCGACTCAAGACAAACAAGGGCTGATTCTGTCTGCGCATGGCGGCAGTTTATTTTTAGATGAAATT
GCTGAGTTACCGCTCACTATGCAGGTGAAACTGCTGCGCGCGGTACAAGAAAAACGCATTCGTCCAATAGGTAGCGACAC
CGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGCCATCAAGACTTAGAAGCACTGGTGCAACAAGGCAAGTTCCGTC
AGGATTTATACTTCCGCATCCATGTCATGGACATTGTGCTGCCTGCTCTACGTGAGCGTGGCAATGACATTATTCTTTTG
GCACAATATTTCATTCAAAAAATCTGCCAAGAATGGGACATCCCAGTCAAACCACTGAGTGAACGTGCACGTGAGTTTTT
ATTGGCCCAATATTATCCAGGCAATGTGCGTGAACTACGCAATATGATGGAACGTGCCATCACCTTAAGTGATGAAAGCA
GTATCGACTTACCACACTTGCAAACAGCCCCACTGCGACCGATTGCTCAGACCAACTATGCTAATGCCACGCAACAAGGC
GCAGTTAGCAATGATCAACTCAGTCATGTGCCTTCACGTAAATTACCCGAAGAGGGTTTAGAGCTGTATTTAGAGAAAAT
TGAAAAAGAAATTTTGATGAATGCGCTCAACCTCACCCACTGGAACCGAACCCTAGCGGCTAAAAAGCTCGGCATGTCTT
TCCGTTCTTTACGTTATCGCTTGAAGAAATTCGGGCTAGATGGCGAAGACGATTCCGTTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.576

99.789

0.744
  pilR Pseudomonas aeruginosa PAK

49.784

98.097

0.488