Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EGT72_RS01120 Genome accession   NZ_CP079792
Coordinates   230963..232531 (-) Length   522 a.a.
NCBI ID   WP_125280620.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 225963..237531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01105 (EGT72_001105) gpmI 226780..228327 (+) 1548 WP_125280623.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  EGT72_RS01110 (EGT72_001110) - 228346..229521 (+) 1176 WP_125280622.1 S41 family peptidase -
  EGT72_RS01115 (EGT72_001115) pilR 229526..230947 (-) 1422 WP_125280621.1 sigma-54 dependent transcriptional regulator Regulator
  EGT72_RS01120 (EGT72_001120) pilS 230963..232531 (-) 1569 WP_125280620.1 ATP-binding protein Regulator
  EGT72_RS01125 (EGT72_001125) - 232554..233189 (-) 636 WP_010325697.1 response regulator -
  EGT72_RS01130 (EGT72_001130) - 233405..234460 (+) 1056 WP_125280619.1 serine hydrolase -
  EGT72_RS01135 (EGT72_001135) thrC 234546..235685 (-) 1140 WP_058868731.1 threonine synthase -
  EGT72_RS01140 (EGT72_001140) - 235751..237055 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59624.03 Da        Isoelectric Point: 6.7132

>NTDB_id=589502 EGT72_RS01120 WP_125280620.1 230963..232531(-) (pilS) [Acinetobacter johnsonii strain AJ_082]
MARHNSNIQLNQYRLGIWYASYRLFIGCCLLLVFLLTYAQLFSNYQYPALYRYVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASSVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQASDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYHISDPAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRIYSYKNLVHIEVQDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=589502 EGT72_RS01120 WP_125280620.1 230963..232531(-) (pilS) [Acinetobacter johnsonii strain AJ_082]
ATGGCTCGACACAATAGCAATATTCAACTCAACCAATACCGCTTAGGCATTTGGTATGCGTCGTATCGACTGTTTATTGG
CTGTTGTTTACTGCTGGTATTTTTACTGACCTATGCGCAACTGTTTTCAAACTACCAGTATCCAGCACTATATCGCTATG
TACTGATTGGCTTTATTTTTATCAGTGCCTTTCAGTTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACTTTGCTGTTTATTGTCGATGTCATTAGCCTCAGTTTACTCACTTTCGCAACCGATGGTCCGAACTTACAGTTAAGTTT
ATTGTTTGTGATCACGATCTTTGCCTCTTCTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATCTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTCCTTAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAAACACTCACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAACTGGCTGCACTAGGTCAGCTTTCTGCCAGTATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACTCAAGCCAATGAGTTGATGCAAGCCAGTGATCCACAACAAGAGCT
GTTGCAGAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACATTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCACATTTCCGATCCAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAACATATTCACATTCGCATCTATAGCTACAAAAACCTCGTCCACATTG
AGGTCCAAGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCTCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

61.434

98.851

0.607