Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   KX728_RS03155 Genome accession   NZ_CP079724
Coordinates   607788..609746 (+) Length   652 a.a.
NCBI ID   WP_215804844.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 602788..614746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS03130 (KX728_03125) - 602931..603443 (+) 513 WP_000892233.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  KX728_RS03135 (KX728_03130) - 603427..604077 (+) 651 WP_125441798.1 DUF1803 domain-containing protein -
  KX728_RS03140 (KX728_03135) - 604179..604379 (+) 201 WP_000051185.1 CsbD family protein -
  KX728_RS03145 (KX728_03140) - 604412..605857 (-) 1446 WP_070696316.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  KX728_RS03150 (KX728_03145) - 605963..607585 (+) 1623 WP_215804845.1 polysaccharide biosynthesis protein -
  KX728_RS03155 (KX728_03150) amiA 607788..609746 (+) 1959 WP_215804844.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS03160 (KX728_03155) - 609892..610986 (+) 1095 WP_000031951.1 cystathionine gamma-synthase -
  KX728_RS03165 (KX728_03160) - 610994..612160 (+) 1167 WP_000521336.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72863.98 Da        Isoelectric Point: 4.7326

>NTDB_id=588971 KX728_RS03155 WP_215804844.1 607788..609746(+) (amiA) [Streptococcus oralis strain 34]
MKKSKAKYLTLASVVLSAGILLSACGNSNSATKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYINFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTTDEYEKAKGKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=588971 KX728_RS03155 WP_215804844.1 607788..609746(+) (amiA) [Streptococcus oralis strain 34]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAATAGCGCTACTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAACGACATCGTGACCAATTTGGTGGATGGATTGATGGAAAATGACCAATATGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCGGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACGGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCGTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTCTATAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGCATGCAAAATGCAACTTCTTATTACATAAACTTCAACTTGGATAGAAAATCATATAACTTCACGTCTAAATCATCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTTTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCTACGTTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCGGACGCACAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCTGTAGACCAATCAGCTAAAAAAGGTGTACTTGAAGCGAGCTCTTTAA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGTTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTGCAAGATAAGACTGTAACGACTGATGAGTATGAAAAAGCTAAAGGAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.69

100

0.563