Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KXY09_RS12590 Genome accession   NZ_CP079719
Coordinates   2601633..2601968 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596633..2606968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS12570 (KXY09_12565) gcvT 2597239..2598339 (-) 1101 WP_012117974.1 glycine cleavage system aminomethyltransferase GcvT -
  KXY09_RS12575 (KXY09_12570) - 2598763..2600433 (+) 1671 WP_025284995.1 DEAD/DEAH box helicase -
  KXY09_RS12580 (KXY09_12575) - 2600455..2601249 (+) 795 WP_136396493.1 YqhG family protein -
  KXY09_RS12585 (KXY09_12580) sinI 2601426..2601599 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KXY09_RS12590 (KXY09_12585) sinR 2601633..2601968 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KXY09_RS12595 (KXY09_12590) tasA 2602016..2602801 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KXY09_RS12600 (KXY09_12595) sipW 2602866..2603450 (-) 585 WP_371877457.1 signal peptidase I SipW -
  KXY09_RS12605 (KXY09_12600) tapA 2603422..2604093 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  KXY09_RS12610 (KXY09_12605) - 2604352..2604681 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  KXY09_RS12615 (KXY09_12610) - 2604721..2604900 (-) 180 WP_003153093.1 YqzE family protein -
  KXY09_RS12620 (KXY09_12615) comGG 2604957..2605334 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  KXY09_RS12625 (KXY09_12620) comGF 2605335..2605835 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  KXY09_RS12630 (KXY09_12625) comGE 2605744..2606058 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  KXY09_RS12635 (KXY09_12630) comGD 2606042..2606479 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  KXY09_RS12640 (KXY09_12635) comGC 2606469..2606777 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=588910 KXY09_RS12590 WP_003153104.1 2601633..2601968(+) (sinR) [Bacillus velezensis strain LABIM44]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=588910 KXY09_RS12590 WP_003153104.1 2601633..2601968(+) (sinR) [Bacillus velezensis strain LABIM44]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991