Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KXJ80_RS05545 Genome accession   NZ_CP079718
Coordinates   1014318..1015043 (+) Length   241 a.a.
NCBI ID   WP_259474562.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain HD6416     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1009318..1020043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ80_RS05535 (KXJ80_05505) uvrA 1009581..1012433 (-) 2853 WP_240292954.1 excinuclease ABC subunit UvrA -
  KXJ80_RS05540 (KXJ80_05510) - 1012842..1014209 (+) 1368 WP_037422579.1 MFS transporter -
  KXJ80_RS05545 (KXJ80_05515) ssb 1014318..1015043 (+) 726 WP_259474562.1 single-stranded DNA-binding protein Machinery gene
  KXJ80_RS05550 (KXJ80_05520) - 1015264..1016436 (+) 1173 WP_053034696.1 site-specific integrase -
  KXJ80_RS05555 (KXJ80_05525) - 1016442..1018025 (+) 1584 WP_259474563.1 site-specific integrase -
  KXJ80_RS05560 (KXJ80_05530) - 1018018..1020027 (+) 2010 WP_259474564.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26096.56 Da        Isoelectric Point: 6.2359

>NTDB_id=588849 KXJ80_RS05545 WP_259474562.1 1014318..1015043(+) (ssb) [Shewanella xiamenensis strain HD6416]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQSQGQGQGAPMGGMPQNGGYQSAPQQAAPAQNQYAPAPQAAP
AYQAPAPQPQSGYNQQPAQQSYGQQQSHAQQHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=588849 KXJ80_RS05545 WP_259474562.1 1014318..1015043(+) (ssb) [Shewanella xiamenensis strain HD6416]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAACGCAGTCGCAAACATCACCGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAACGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAATTGCAAACGCGTAAGTGGAAAGATCAAAGCGGTCAAGATCGTTACAGTACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGCGGCCGCAATCAAGGCCAAAGTCAAGGTCAAGGCCAAGGTGCCCCAATGGGTGGTATGCCAC
AAAACGGCGGTTACCAATCAGCCCCACAACAAGCTGCTCCTGCGCAAAATCAATACGCGCCAGCACCGCAAGCGGCTCCG
GCTTACCAAGCACCAGCGCCACAACCTCAATCTGGCTACAATCAGCAGCCAGCTCAACAAAGCTATGGCCAGCAGCAATC
CCATGCGCAGCAACATGCTCAGCCACAGCAAGGTGGTTATGCGCCTAAGCCTGCTGCACCAGCGTATCAAGCCCCAGCTG
CACCTGCACAACGTCCAGCGCCACAACCACAACAAAACTTCACCCCAGATTTGGATGATGGTTGGGACGACGATATCCCG
TTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.586

82.158

0.481
  ssb Glaesserella parasuis strain SC1401

43.333

99.585

0.432
  ssb Neisseria meningitidis MC58

40.756

98.755

0.402