Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KXJ79_RS07635 Genome accession   NZ_CP079716
Coordinates   1728024..1730240 (+) Length   738 a.a.
NCBI ID   WP_219171133.1    Uniprot ID   -
Organism   Pseudomonas amygdali strain HS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1723024..1735240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ79_RS07620 (KXJ79_07620) - 1725363..1725986 (+) 624 WP_004657835.1 glutathione S-transferase -
  KXJ79_RS07625 (KXJ79_07625) - 1726170..1727102 (+) 933 WP_058408939.1 ABC transporter ATP-binding protein -
  KXJ79_RS07630 (KXJ79_07630) - 1727099..1727887 (+) 789 WP_219171132.1 ABC transporter permease -
  KXJ79_RS07635 (KXJ79_07635) comA 1728024..1730240 (+) 2217 WP_219171133.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KXJ79_RS07640 (KXJ79_07640) exbB 1730322..1730999 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KXJ79_RS07645 (KXJ79_07645) - 1730996..1731427 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  KXJ79_RS07650 (KXJ79_07650) lpxK 1731427..1732422 (+) 996 WP_219171134.1 tetraacyldisaccharide 4'-kinase -
  KXJ79_RS07655 (KXJ79_07655) - 1732440..1732625 (+) 186 WP_002552679.1 Trm112 family protein -
  KXJ79_RS07660 (KXJ79_07660) kdsB 1732622..1733386 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KXJ79_RS07665 (KXJ79_07665) murB 1733421..1734440 (+) 1020 WP_058401673.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80507.10 Da        Isoelectric Point: 10.2929

>NTDB_id=588834 KXJ79_RS07635 WP_219171133.1 1728024..1730240(+) (comA) [Pseudomonas amygdali strain HS1]
MRTGMIALALGLVALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGAKSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLVPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRTLPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPVLLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAVPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSLPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCVSGARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVAPVGVLISRGRNNAFGHPHPLVMARYRWLGMAIYDSAEMGAVSLRL
GTFGTPQAERAKRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=588834 KXJ79_RS07635 WP_219171133.1 1728024..1730240(+) (comA) [Pseudomonas amygdali strain HS1]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGCGTTACGCTTTCTGCCTGCTTTGCCGCCTACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGTTTCGTACCTATCCGCTGGCGCTTTTCCTGCTCGGTTTTACCT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGCCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAGCTGGAAGGGGCCAAGTCGCGCAGGGCGATACT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAATAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCAGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCTCAGCGCATCGGTGCCACCGGC
ACGGTGGTGGATGGTCAATTGCTGGTACCTGCGCGTGGGGCGTGGCGCGATCTTATTCGTCAGCGCTTGCTGGCGGTTGA
TGCGCAGGGCCGAGAGGGCGGCTTGGCGGCTCTGGTGCTGGGCGATGGCTCCGGGTTGTCGAGCACCGACTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGACTTTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTACTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTGGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTCGGCATTCTGGTGCTGATTTTCAGTGGCCGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTGTTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAATCTACTTGCCGTACCTTGGGTCAGCTTGATAGTCCTGCCGCCTGCGTTG
CTCGGAACACTGCTGCTGCCGGTCCCTGTTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGAGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCAGTCTTGCCCGCCTGGTTGCCCAGTGCAGTGCCGGGCTGGGCGTGGCTGCTGAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTACCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGTTGTGCGTT
TTTCCGCCGCTCGACTCATTGCCTGCAGGCCAGGTAGAAGTATTGCAACTGGACGTGGGGCAGGGTTTGGCCATTCTATT
GCGCACTCGAAATCACACGCTCTTGTACGATGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCTGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGATTCCGATCATGCCGGGGGAGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGTGAGCGGTGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGTTGGGAGCAGGGGCCTGATGGCA
ATCCGGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGATGCGGAA
CGTGCGGCAATAGCCAGCGGTTTCGATCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTGTTTCTTCAGGCCGTCGCACCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CATTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCATTTATGACAGCGCCGAGATGGGCGCTGTCAGTCTGCGGCTG
GGTACGTTCGGCACGCCGCAGGCAGAGCGTGCAAAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.343

97.154

0.606
  comA Ralstonia pseudosolanacearum GMI1000

33.021

100

0.382