Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KXJ79_RS07640 Genome accession   NZ_CP079716
Coordinates   1730322..1730999 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali strain HS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725322..1735999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ79_RS07620 (KXJ79_07620) - 1725363..1725986 (+) 624 WP_004657835.1 glutathione S-transferase -
  KXJ79_RS07625 (KXJ79_07625) - 1726170..1727102 (+) 933 WP_058408939.1 ABC transporter ATP-binding protein -
  KXJ79_RS07630 (KXJ79_07630) - 1727099..1727887 (+) 789 WP_219171132.1 ABC transporter permease -
  KXJ79_RS07635 (KXJ79_07635) comA 1728024..1730240 (+) 2217 WP_219171133.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KXJ79_RS07640 (KXJ79_07640) exbB 1730322..1730999 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KXJ79_RS07645 (KXJ79_07645) - 1730996..1731427 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  KXJ79_RS07650 (KXJ79_07650) lpxK 1731427..1732422 (+) 996 WP_219171134.1 tetraacyldisaccharide 4'-kinase -
  KXJ79_RS07655 (KXJ79_07655) - 1732440..1732625 (+) 186 WP_002552679.1 Trm112 family protein -
  KXJ79_RS07660 (KXJ79_07660) kdsB 1732622..1733386 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KXJ79_RS07665 (KXJ79_07665) murB 1733421..1734440 (+) 1020 WP_058401673.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=588835 KXJ79_RS07640 WP_002552676.1 1730322..1730999(+) (exbB) [Pseudomonas amygdali strain HS1]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=588835 KXJ79_RS07640 WP_002552676.1 1730322..1730999(+) (exbB) [Pseudomonas amygdali strain HS1]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGCATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCTGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCGGCCATGGCACCGTTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCGGGGGCTACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCCGGTCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTCCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738