Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SA27298_RS06450 Genome accession   NZ_AP018548
Coordinates   1324747..1325343 (-) Length   198 a.a.
NCBI ID   WP_003031408.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1319747..1330343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS06425 (SA27298_1308) - 1320135..1320818 (-) 684 WP_003031415.1 TIGR02206 family membrane protein -
  SA27298_RS06430 (SA27298_1309) - 1320822..1321520 (-) 699 WP_003031419.1 TIGR02206 family membrane protein -
  SA27298_RS06435 (SA27298_1310) - 1321524..1322057 (-) 534 Protein_1234 DUF1697 domain-containing protein -
  SA27298_RS06440 (SA27298_1311) murF 1322066..1323436 (-) 1371 WP_003031426.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SA27298_RS06445 (SA27298_1312) - 1323568..1324614 (-) 1047 WP_003031425.1 D-alanine--D-alanine ligase -
  SA27298_RS06450 (SA27298_1313) recR 1324747..1325343 (-) 597 WP_003031408.1 recombination mediator RecR Machinery gene
  SA27298_RS06455 (SA27298_1314) pbp2b 1325354..1327414 (-) 2061 WP_026248181.1 penicillin-binding protein PBP2B -
  SA27298_RS06460 (SA27298_1315) - 1327570..1328262 (-) 693 WP_003023729.1 phosphoglycerate mutase -
  SA27298_RS06465 (SA27298_1316) - 1328404..1328865 (-) 462 WP_003031404.1 Fur family transcriptional regulator -
  SA27298_RS06470 (SA27298_1317) - 1329043..1329318 (-) 276 WP_003023726.1 HU family DNA-binding protein -
  SA27298_RS06475 (SA27298_1318) - 1329447..1330280 (-) 834 WP_003031393.1 DegV family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21650.70 Da        Isoelectric Point: 4.3503

>NTDB_id=58828 SA27298_RS06450 WP_003031408.1 1324747..1325343(-) (recR) [Streptococcus anginosus strain CCUG 27928]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCTICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMNSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=58828 SA27298_RS06450 WP_003031408.1 1324747..1325343(-) (recR) [Streptococcus anginosus strain CCUG 27928]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCGAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATGATCCTTGTACTATCTGCACTGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTTTCTGCTATGGAAAATATTCAAGAATACCATGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACACGGTTGATGAATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCGGACGGGGAAGCAACTTCCATGTATATCTCACGGGTGTTA
AAACCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGATATTGAATATGCAGACGAAGTGAC
GCTGCTTCGGGCTATTGAGAATCGCACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment