Detailed information NTG0058796

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PFLCHA0_RS26335
• Genome accession: NC_021237
• Coordinates: 5895098..5896432 (+)
• Length: 444 a.a.
• NCBI ID: WP_041752595.1
• Uniprot ID: A0A9Q7R678
• Organism: Pseudomonas protegens CHA0
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5890098..5901432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFLCHA0_RS26315 (PFLCHA0_c52790)	pgeF	5891454..5892179 (-)	726	WP_015637079.1	peptidoglycan editing factor PgeF	-
PFLCHA0_RS26320 (PFLCHA0_c52800)	rluD	5892176..5893138 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PFLCHA0_RS26325 (PFLCHA0_c52810)	-	5893289..5894314 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
PFLCHA0_RS26330 (PFLCHA0_c52820)	-	5894439..5894672 (+)	234	WP_015637081.1	PP0621 family protein	-
PFLCHA0_RS26335 (PFLCHA0_c52830)	pilR	5895098..5896432 (+)	1335	WP_041752595.1	sigma-54-dependent transcriptional regulator	Regulator
PFLCHA0_RS26340 (PFLCHA0_c52840)	thiO	5896429..5897529 (-)	1101	WP_015637083.1	glycine oxidase ThiO	-
PFLCHA0_RS26345 (PFLCHA0_c52850)	-	5897583..5897984 (-)	402	WP_015637084.1	type IV pilin protein	-
PFLCHA0_RS26350 (PFLCHA0_c52860)	-	5898000..5901062 (-)	3063	WP_015637085.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.50 Da
• Isoelectric Point: 8.6800

>NTDB_id=58796 PFLCHA0_RS26335 WP_041752595.1 5895098..5896432(+) (pilR) [Pseudomonas protegens CHA0]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=58796 PFLCHA0_RS26335 WP_041752595.1 5895098..5896432(+) (pilR) [Pseudomonas protegens CHA0]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTAGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365