Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KPF49_RS03905 Genome accession   NZ_CP079110
Coordinates   765929..766258 (+) Length   109 a.a.
NCBI ID   WP_183674895.1    Uniprot ID   A0A9Q2HG05
Organism   Nosocomiicoccus ampullae strain DSM 19163     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760929..771258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF49_RS03875 (KPF49_03875) - 761060..762481 (+) 1422 WP_183674911.1 rhomboid family protein -
  KPF49_RS03880 (KPF49_03880) - 762514..762747 (-) 234 WP_183674908.1 DUF2759 domain-containing protein -
  KPF49_RS03885 (KPF49_03885) - 762835..763458 (+) 624 WP_183674905.1 MBL fold metallo-hydrolase -
  KPF49_RS03890 (KPF49_03890) - 763503..763748 (-) 246 WP_040928347.1 DUF2626 family protein -
  KPF49_RS03895 (KPF49_03895) - 763908..764900 (+) 993 WP_183674901.1 ATPase, T2SS/T4P/T4SS family -
  KPF49_RS03900 (KPF49_03900) comGB 764872..765918 (+) 1047 WP_183674898.1 competence type IV pilus assembly protein ComGB -
  KPF49_RS03905 (KPF49_03905) comGC 765929..766258 (+) 330 WP_183674895.1 competence type IV pilus major pilin ComGC Machinery gene
  KPF49_RS03910 (KPF49_03910) - 766236..766667 (+) 432 WP_183674892.1 type II secretion system protein -
  KPF49_RS03915 (KPF49_03915) - 766657..766920 (+) 264 WP_183674889.1 hypothetical protein -
  KPF49_RS03920 (KPF49_03920) - 766883..767305 (+) 423 WP_183674886.1 ComGF family competence protein -
  KPF49_RS03925 (KPF49_03925) - 767456..767938 (+) 483 WP_219490165.1 shikimate kinase -
  KPF49_RS03930 (KPF49_03930) gcvT 768185..769258 (+) 1074 WP_183674880.1 glycine cleavage system aminomethyltransferase GcvT -
  KPF49_RS03935 (KPF49_03935) gcvPA 769288..770631 (+) 1344 WP_183674877.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11945.07 Da        Isoelectric Point: 9.6083

>NTDB_id=587849 KPF49_RS03905 WP_183674895.1 765929..766258(+) (comGC) [Nosocomiicoccus ampullae strain DSM 19163]
MKLNIKKFIQKSKKSEGFTLIEMLLVLLVISVLIILIIPNIAAQSKNVQNTGCEAQVKMVQSQIEAYTLNEGQPPTNISQ
LVPNYLTDKQVSCSNGTGIKIVNGQATKE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=587849 KPF49_RS03905 WP_183674895.1 765929..766258(+) (comGC) [Nosocomiicoccus ampullae strain DSM 19163]
ATGAAACTGAATATTAAAAAGTTTATACAAAAAAGTAAAAAATCAGAAGGTTTTACTTTAATTGAAATGTTACTCGTACT
ACTCGTTATATCTGTACTCATTATATTAATTATCCCAAACATAGCCGCACAATCCAAAAATGTACAAAATACTGGCTGTG
AAGCTCAGGTGAAAATGGTACAAAGCCAAATTGAAGCCTACACATTAAACGAAGGGCAACCACCAACAAATATTAGCCAA
CTCGTACCAAATTACCTCACAGATAAACAAGTGTCTTGTTCTAATGGTACAGGAATTAAGATCGTAAATGGGCAAGCTAC
AAAAGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.789

87.156

0.486
  comGC Staphylococcus aureus N315

55.789

87.156

0.486
  comGC/cglC Streptococcus mitis SK321

38.835

94.495

0.367
  comGC Lactococcus lactis subsp. cremoris KW2

41.237

88.991

0.367