Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   M1M81_RS16560 Genome accession   NZ_CP096591
Coordinates   3358866..3360851 (-) Length   661 a.a.
NCBI ID   WP_003151439.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain A15.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3353866..3365851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M81_RS16540 (M1M81_16540) - 3354051..3355148 (-) 1098 WP_007614045.1 DUF4097 domain-containing protein -
  M1M81_RS16545 (M1M81_16545) - 3355173..3355499 (-) 327 WP_003151444.1 hypothetical protein -
  M1M81_RS16550 (M1M81_16550) - 3355697..3355936 (+) 240 WP_032876198.1 hypothetical protein -
  M1M81_RS16555 (M1M81_16555) uvrA 3355985..3358858 (-) 2874 WP_032876195.1 excinuclease ABC subunit UvrA Machinery gene
  M1M81_RS16560 (M1M81_16560) uvrB 3358866..3360851 (-) 1986 WP_003151439.1 excinuclease ABC subunit UvrB Machinery gene
  M1M81_RS16565 (M1M81_16565) - 3361027..3361263 (-) 237 WP_003151438.1 CsbA family protein -
  M1M81_RS16570 (M1M81_16570) - 3361564..3364065 (+) 2502 WP_032876192.1 PEP/pyruvate-binding domain-containing protein -
  M1M81_RS16575 (M1M81_16575) - 3364137..3364760 (+) 624 WP_015240677.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76447.20 Da        Isoelectric Point: 5.1906

>NTDB_id=587358 M1M81_RS16560 WP_003151439.1 3358866..3360851(-) (uvrB) [Bacillus amyloliquefaciens strain A15.1]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=587358 M1M81_RS16560 WP_003151439.1 3358866..3360851(-) (uvrB) [Bacillus amyloliquefaciens strain A15.1]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATCTGATTA
AAGAAGTGAATAAACCGACACTGGTCATTGCCCATAACAAAACCCTAGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTCCCGAACAACGCTGTCGAATATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCGTACGTGCCTCAAACGGATAC
TTTTATAGAGAAAGACGCAAGCATTAATGATGAAATTGATAAACTGAGACACTCCGCGACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATTGCGAGTGTGTCATGCATATACGGTCTCGGTTCACCTGAAGAATACCGGGAGATGGTTGTGTCG
CTCAGACCGGAAATGGAAATTGAGCGGAACGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTTCCGGCTTCCCGTGATGAACATTGTATCAGAG
TGGAATTTTTCGGAGATGAAATTGAGCGGATCAGAGAGGTCGACGCTTTGACCGGAGAAATTCTCGGCGACCGTGACCAT
GTCGCAATTTTCCCGGCTTCCCACTTCGTCACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTGAAAGTGATGCACGAAAACGGCAAGCTCCTTGAAGCGCAGCGGCTTGAGCAGCGGACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACACTCCGTCCGCCGGGCTCT
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACATGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAGAAACACATGCACAATATCGTGTACGTGTCGGCGACTCCAGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGACCGACGGGACTCCTCGATCCCCTCATTGACGTCCGTCCGAT
CGAAGGACAGATTGATGATCTGATCGGCGAGATTCAGGCGAGAATTGAACGGAATGAGCGCGTTCTTGTGACGACTTTAA
CGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAGGAAATCGGCATCAAGGTCAATTATCTGCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGAAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTCGATGCGGATAAAGAAGGCTTCCTCCGTTCCGAACGTTCGC
TGATTCAGACGATCGGACGGGCGGCACGAAACGCGGAAGGCCGCGTCATCATGTATGCCGATAAAATCACGAATTCGATG
GAAATCGCGATTAATGAAACGAAGCGCCGCCGGGAACAGCAGGAGCGCTTTAACGAAATTCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAACTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

Type III restriction enzyme, res subunit (ResIII)

(12-130)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699