Detailed information NTG0058731

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K750_RS07775
• Genome accession: NC_021217
• Coordinates: 1602716..1603852 (+)
• Length: 378 a.a.
• NCBI ID: WP_015644755.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM037
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1597716..1608852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K750_RS07740 (K750_00015)	panD	1598164..1598517 (+)	354	WP_000142235.1	aspartate 1-decarboxylase	-
K750_RS07745 (K750_00010)	-	1598520..1598822 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
K750_RS07750 (K750_00005)	-	1598822..1599817 (+)	996	WP_015643461.1	PDZ domain-containing protein	-
K750_RS07755 (K750_09110)	comB6	1599825..1600880 (+)	1056	WP_015644758.1	P-type conjugative transfer protein TrbL	Machinery gene
K750_RS07760 (K750_09115)	comB7	1600896..1601009 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
K750_RS07765 (K750_09120)	comB8	1601006..1601749 (+)	744	WP_015644757.1	type IV secretion system protein	Machinery gene
K750_RS07770 (K750_09125)	comB9	1601749..1602723 (+)	975	WP_015644756.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K750_RS07775 (K750_09130)	comB10	1602716..1603852 (+)	1137	WP_015644755.1	DNA type IV secretion system protein ComB10	Machinery gene
K750_RS07780 (K750_09135)	-	1603922..1605334 (+)	1413	WP_015644754.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K750_RS07785 (K750_09140)	gmd	1605349..1606494 (+)	1146	WP_015644753.1	GDP-mannose 4,6-dehydratase	-
K750_RS07790 (K750_09145)	-	1606487..1607419 (+)	933	WP_015644752.1	GDP-L-fucose synthase family protein	-
K750_RS07795 (K750_09150)	-	1607764..1608069 (-)	306	WP_031245544.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42133.68 Da
• Isoelectric Point: 9.9021

>NTDB_id=58731 K750_RS07775 WP_015644755.1 1602716..1603852(+) (comB10) [Helicobacter pylori UM037]
MNKWLKGAVVFIGGFATITTISLVYHQKPKAPINNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=58731 K750_RS07775 WP_015644755.1 1602716..1603852(+) (comB10) [Helicobacter pylori UM037]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCATAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATTGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.619	100	0.976