Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   K750_RS07765 Genome accession   NC_021217
Coordinates   1601006..1601749 (+) Length   247 a.a.
NCBI ID   WP_015644757.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1596006..1606749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS07740 (K750_00015) panD 1598164..1598517 (+) 354 WP_000142235.1 aspartate 1-decarboxylase -
  K750_RS07745 (K750_00010) - 1598520..1598822 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  K750_RS07750 (K750_00005) - 1598822..1599817 (+) 996 WP_015643461.1 PDZ domain-containing protein -
  K750_RS07755 (K750_09110) comB6 1599825..1600880 (+) 1056 WP_015644758.1 P-type conjugative transfer protein TrbL Machinery gene
  K750_RS07760 (K750_09115) comB7 1600896..1601009 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  K750_RS07765 (K750_09120) comB8 1601006..1601749 (+) 744 WP_015644757.1 type IV secretion system protein Machinery gene
  K750_RS07770 (K750_09125) comB9 1601749..1602723 (+) 975 WP_015644756.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K750_RS07775 (K750_09130) comB10 1602716..1603852 (+) 1137 WP_015644755.1 DNA type IV secretion system protein ComB10 Machinery gene
  K750_RS07780 (K750_09135) - 1603922..1605334 (+) 1413 WP_015644754.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  K750_RS07785 (K750_09140) gmd 1605349..1606494 (+) 1146 WP_015644753.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28780.00 Da        Isoelectric Point: 8.9604

>NTDB_id=58729 K750_RS07765 WP_015644757.1 1601006..1601749(+) (comB8) [Helicobacter pylori UM037]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=58729 K750_RS07765 WP_015644757.1 1601006..1601749(+) (comB8) [Helicobacter pylori UM037]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAGAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACTCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984

Multiple sequence alignment