Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HQ966_RS18665 Genome accession   NZ_CP078139
Coordinates   4104566..4106782 (-) Length   738 a.a.
NCBI ID   WP_031594867.1    Uniprot ID   -
Organism   Pseudomonas savastanoi pv. savastanoi strain PVFi1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4099566..4111782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ966_RS18635 (HQ966_18510) murB 4100366..4101385 (-) 1020 WP_002552681.1 UDP-N-acetylmuramate dehydrogenase -
  HQ966_RS18640 (HQ966_18515) kdsB 4101420..4102184 (-) 765 WP_002552680.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HQ966_RS18645 (HQ966_18520) - 4102181..4102366 (-) 186 WP_002552679.1 Trm112 family protein -
  HQ966_RS18650 (HQ966_18525) lpxK 4102384..4103379 (-) 996 WP_002552678.1 tetraacyldisaccharide 4'-kinase -
  HQ966_RS18655 (HQ966_18530) - 4103379..4103810 (-) 432 WP_002552677.1 biopolymer transporter ExbD -
  HQ966_RS18660 (HQ966_18535) exbB 4103807..4104484 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HQ966_RS18665 (HQ966_18540) comA 4104566..4106782 (-) 2217 WP_031594867.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HQ966_RS18670 (HQ966_18545) - 4106919..4107707 (-) 789 WP_002552673.1 ABC transporter permease -
  HQ966_RS18675 (HQ966_18550) - 4107704..4108636 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  HQ966_RS18680 (HQ966_18555) - 4108820..4109443 (-) 624 WP_031594866.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80418.69 Da        Isoelectric Point: 9.9505

>NTDB_id=587273 HQ966_RS18665 WP_031594867.1 4104566..4106782(-) (comA) [Pseudomonas savastanoi pv. savastanoi strain PVFi1]
MRTGMIALASGLVALRLLPALPPTWLLLLIPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVSGVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRLLGWPLLLLCA
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADADHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVMFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDADAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGTVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=587273 HQ966_RS18665 WP_031594867.1 4104566..4106782(-) (comA) [Pseudomonas savastanoi pv. savastanoi strain PVFi1]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTGCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATACCGATACTGGCGTTGATGCTGCTACCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACCT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAAGGGGCAAGGTCGCGCAGGGCGATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGATTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGTTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTCTCTGGTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGGGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCAGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCAGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCTGCTGGGTTGGCCATTGCTGTTGTTGTGCGCT
TTTCCGCCGCTCGACTCAGTGCCAGCAGGCCAGGTAGAAGTATTGCAGCTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGATGCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGATGTTCTCCACCTGGCGCTGGGAGCAGGGCCCTGATGGCA
ATCCGGCATCCTGCATGTTGAGTGTCGACGCAGGGGGCGAGCGTCTGCTGCTGACGGGTGATATAGACGCCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCACTGTCAGTCTGCGGCTG
GGGACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-668)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.204

97.154

0.604
  comA Ralstonia pseudosolanacearum GMI1000

32.553

100

0.377