Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HQ966_RS18660 Genome accession   NZ_CP078139
Coordinates   4103807..4104484 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas savastanoi pv. savastanoi strain PVFi1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4098807..4109484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ966_RS18635 (HQ966_18510) murB 4100366..4101385 (-) 1020 WP_002552681.1 UDP-N-acetylmuramate dehydrogenase -
  HQ966_RS18640 (HQ966_18515) kdsB 4101420..4102184 (-) 765 WP_002552680.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HQ966_RS18645 (HQ966_18520) - 4102181..4102366 (-) 186 WP_002552679.1 Trm112 family protein -
  HQ966_RS18650 (HQ966_18525) lpxK 4102384..4103379 (-) 996 WP_002552678.1 tetraacyldisaccharide 4'-kinase -
  HQ966_RS18655 (HQ966_18530) - 4103379..4103810 (-) 432 WP_002552677.1 biopolymer transporter ExbD -
  HQ966_RS18660 (HQ966_18535) exbB 4103807..4104484 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HQ966_RS18665 (HQ966_18540) comA 4104566..4106782 (-) 2217 WP_031594867.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HQ966_RS18670 (HQ966_18545) - 4106919..4107707 (-) 789 WP_002552673.1 ABC transporter permease -
  HQ966_RS18675 (HQ966_18550) - 4107704..4108636 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  HQ966_RS18680 (HQ966_18555) - 4108820..4109443 (-) 624 WP_031594866.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=587272 HQ966_RS18660 WP_002552676.1 4103807..4104484(-) (exbB) [Pseudomonas savastanoi pv. savastanoi strain PVFi1]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=587272 HQ966_RS18660 WP_002552676.1 4103807..4104484(-) (exbB) [Pseudomonas savastanoi pv. savastanoi strain PVFi1]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738