Detailed information NTG0058723

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K750_RS07080
• Genome accession: NC_021217
• Coordinates: 1460814..1462013 (+)
• Length: 399 a.a.
• NCBI ID: WP_015643570.1
• Uniprot ID: A0AB33Z594
• Organism: Helicobacter pylori UM037
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1455814..1467013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K750_RS07050 (K750_00710)	-	1457867..1458718 (+)	852	Protein_1379	HsdR family type I site-specific deoxyribonuclease	-
K750_RS07055 (K750_00705)	-	1458703..1459194 (+)	492	Protein_1380	integrase	-
K750_RS07060 (K750_00700)	-	1459298..1459777 (+)	480	WP_000571125.1	hypothetical protein	-
K750_RS07065 (K750_00695)	comB2	1459774..1460058 (+)	285	WP_000736478.1	TrbC/VirB2 family protein	Machinery gene
K750_RS07070 (K750_00690)	comB3	1460069..1460332 (+)	264	WP_001177712.1	hypothetical protein	Machinery gene
K750_RS07075 (K750_00685)	-	1460343..1460579 (+)	237	WP_015643572.1	hypothetical protein	-
K750_RS08575	-	1460626..1460817 (+)	192	Protein_1385	TrbG/VirB9 family P-type conjugative transfer protein	-
K750_RS07080 (K750_00675)	comB10	1460814..1462013 (+)	1200	WP_015643570.1	DNA type IV secretion system protein ComB10	Machinery gene
K750_RS07085 (K750_00670)	-	1461997..1462242 (+)	246	WP_015643569.1	hypothetical protein	-
K750_RS07090	-	1462484..1464514 (+)	2031	WP_015643568.1	collagen-like protein	-
K750_RS07095 (K750_00660)	-	1464527..1465489 (+)	963	WP_015643567.1	hypothetical protein	-
K750_RS07100 (K750_00655)	-	1465507..1465779 (+)	273	WP_015643566.1	hypothetical protein	-
K750_RS07105 (K750_00650)	-	1465784..1466728 (+)	945	WP_015643565.1	CpaF/VirB11 family protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44703.42 Da
• Isoelectric Point: 9.9729

>NTDB_id=58723 K750_RS07080 WP_015643570.1 1460814..1462013(+) (comB10) [Helicobacter pylori UM037]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNQQNNTITHLQQVLQSHPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=58723 K750_RS07080 WP_015643570.1 1460814..1462013(+) (comB10) [Helicobacter pylori UM037]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTTCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTTAATCAGCAAAATAATACTATCACGCA
TTTGCAACAAGTTTTACAAAGCCACCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATACGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACACCTAATTTAGACATCTTTATTCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.926	98.496	0.521