Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ECpv15279_RS19310 Genome accession   NZ_AP018488
Coordinates   3686342..3687334 (-) Length   330 a.a.
NCBI ID   WP_000081565.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain PV15-279     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681342..3692334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECpv15279_RS19285 (ECpv15279_3560) pphB 3682704..3683360 (+) 657 WP_001141350.1 protein-serine/threonine phosphatase -
  ECpv15279_RS19290 (ECpv15279_3561) - 3683401..3683637 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ECpv15279_RS19295 (ECpv15279_3562) - 3683648..3685075 (-) 1428 WP_000863205.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ECpv15279_RS19300 (ECpv15279_3563) - 3685075..3685668 (-) 594 WP_000767724.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ECpv15279_RS19305 (ECpv15279_3564) - 3685815..3686222 (+) 408 WP_000175365.1 MarR family transcriptional regulator -
  ECpv15279_RS19310 (ECpv15279_3565) rpoS 3686342..3687334 (-) 993 WP_000081565.1 RNA polymerase sigma factor RpoS Regulator
  ECpv15279_RS19315 (ECpv15279_3566) nlpD 3687397..3688491 (-) 1095 WP_306256364.1 murein hydrolase activator NlpD -
  ECpv15279_RS19320 (ECpv15279_3567) pcm 3688676..3689302 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ECpv15279_RS19325 (ECpv15279_3568) surE 3689296..3690057 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ECpv15279_RS19330 (ECpv15279_3569) truD 3690038..3691087 (-) 1050 WP_000568934.1 tRNA pseudouridine(13) synthase TruD -
  ECpv15279_RS19335 (ECpv15279_3570) ispF 3691084..3691563 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ECpv15279_RS19340 (ECpv15279_3571) ispD 3691563..3692273 (-) 711 WP_000246158.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.80 Da        Isoelectric Point: 4.5229

>NTDB_id=58721 ECpv15279_RS19310 WP_000081565.1 3686342..3687334(-) (rpoS) [Escherichia coli O157:H7 strain PV15-279]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHQLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=58721 ECpv15279_RS19310 WP_000081565.1 3686342..3687334(-) (rpoS) [Escherichia coli O157:H7 strain PV15-279]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TCAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment