Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   K750_RS07065 Genome accession   NC_021217
Coordinates   1459774..1460058 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454774..1465058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS07045 (K750_10195) - 1455340..1457797 (-) 2458 Protein_1378 type I restriction-modification system subunit M -
  K750_RS07050 (K750_00710) - 1457867..1458718 (+) 852 Protein_1379 HsdR family type I site-specific deoxyribonuclease -
  K750_RS07055 (K750_00705) - 1458703..1459194 (+) 492 Protein_1380 integrase -
  K750_RS07060 (K750_00700) - 1459298..1459777 (+) 480 WP_000571125.1 hypothetical protein -
  K750_RS07065 (K750_00695) comB2 1459774..1460058 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  K750_RS07070 (K750_00690) comB3 1460069..1460332 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  K750_RS07075 (K750_00685) - 1460343..1460579 (+) 237 WP_015643572.1 hypothetical protein -
  K750_RS08575 - 1460626..1460817 (+) 192 Protein_1385 TrbG/VirB9 family P-type conjugative transfer protein -
  K750_RS07080 (K750_00675) comB10 1460814..1462013 (+) 1200 WP_015643570.1 DNA type IV secretion system protein ComB10 Machinery gene
  K750_RS07085 (K750_00670) - 1461997..1462242 (+) 246 WP_015643569.1 hypothetical protein -
  K750_RS07090 - 1462484..1464514 (+) 2031 WP_015643568.1 collagen-like protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=58721 K750_RS07065 WP_000736478.1 1459774..1460058(+) (comB2) [Helicobacter pylori UM037]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=58721 K750_RS07065 WP_000736478.1 1459774..1460058(+) (comB2) [Helicobacter pylori UM037]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment