Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | K750_RS07070 | Genome accession | NC_021217 |
| Coordinates | 1460069..1460332 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | A0AB33Z5Y9 |
| Organism | Helicobacter pylori UM037 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1455069..1465332
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K750_RS07045 (K750_10195) | - | 1455340..1457797 (-) | 2458 | Protein_1378 | type I restriction-modification system subunit M | - |
| K750_RS07050 (K750_00710) | - | 1457867..1458718 (+) | 852 | Protein_1379 | HsdR family type I site-specific deoxyribonuclease | - |
| K750_RS07055 (K750_00705) | - | 1458703..1459194 (+) | 492 | Protein_1380 | integrase | - |
| K750_RS07060 (K750_00700) | - | 1459298..1459777 (+) | 480 | WP_000571125.1 | hypothetical protein | - |
| K750_RS07065 (K750_00695) | comB2 | 1459774..1460058 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| K750_RS07070 (K750_00690) | comB3 | 1460069..1460332 (+) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| K750_RS07075 (K750_00685) | - | 1460343..1460579 (+) | 237 | WP_015643572.1 | hypothetical protein | - |
| K750_RS08575 | - | 1460626..1460817 (+) | 192 | Protein_1385 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| K750_RS07080 (K750_00675) | comB10 | 1460814..1462013 (+) | 1200 | WP_015643570.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| K750_RS07085 (K750_00670) | - | 1461997..1462242 (+) | 246 | WP_015643569.1 | hypothetical protein | - |
| K750_RS07090 | - | 1462484..1464514 (+) | 2031 | WP_015643568.1 | collagen-like protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=58722 K750_RS07070 WP_001177712.1 1460069..1460332(+) (comB3) [Helicobacter pylori UM037]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=58722 K750_RS07070 WP_001177712.1 1460069..1460332(+) (comB3) [Helicobacter pylori UM037]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGATATTCTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGATATTCTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |