Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K750_RS04575 Genome accession   NC_021217
Coordinates   963571..964371 (-) Length   266 a.a.
NCBI ID   WP_015643960.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 958571..969371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS04545 (K750_03290) recJ 958824..960374 (+) 1551 WP_015643967.1 single-stranded-DNA-specific exonuclease RecJ -
  K750_RS04550 (K750_03285) - 960374..961255 (+) 882 WP_015643966.1 RluA family pseudouridine synthase -
  K750_RS04555 (K750_03280) - 961370..961930 (-) 561 WP_015643965.1 hypothetical protein -
  K750_RS04560 (K750_03275) - 961914..962252 (-) 339 WP_015643964.1 hypothetical protein -
  K750_RS04565 (K750_10015) - 962367..963038 (-) 672 WP_015643963.1 tetratricopeptide repeat protein -
  K750_RS04570 (K750_03260) dprB 963170..963574 (-) 405 WP_015643961.1 Holliday junction resolvase RuvX Machinery gene
  K750_RS04575 (K750_03255) dprA 963571..964371 (-) 801 WP_015643960.1 DNA-processing protein DprA Machinery gene
  K750_RS04580 (K750_03250) minE 964378..964611 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  K750_RS04585 (K750_03245) minD 964608..965414 (-) 807 WP_015643959.1 septum site-determining protein MinD -
  K750_RS04590 (K750_10025) ilvC 965438..966430 (-) 993 WP_015643958.1 ketol-acid reductoisomerase -
  K750_RS04600 (K750_03235) - 966679..967461 (+) 783 WP_015643957.1 NAD+ synthase -
  K750_RS04605 (K750_03230) - 967458..968396 (+) 939 WP_015643956.1 tetraacyldisaccharide 4'-kinase -
  K750_RS04610 (K750_03225) pseH 968329..968871 (-) 543 WP_015643955.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29859.89 Da        Isoelectric Point: 9.1327

>NTDB_id=58714 K750_RS04575 WP_015643960.1 963571..964371(-) (dprA) [Helicobacter pylori UM037]
MKSHFPYSALENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=58714 K750_RS04575 WP_015643960.1 963571..964371(-) (dprA) [Helicobacter pylori UM037]
ATGAAAAGCCACTTCCCATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCTGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCAAGATTAGCCCAAAAATACCAAAAGCCCTTATTTGTTTTACCCCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTAGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment