Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K750_RS04570 Genome accession   NC_021217
Coordinates   963170..963574 (-) Length   134 a.a.
NCBI ID   WP_015643961.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958170..968574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS04545 (K750_03290) recJ 958824..960374 (+) 1551 WP_015643967.1 single-stranded-DNA-specific exonuclease RecJ -
  K750_RS04550 (K750_03285) - 960374..961255 (+) 882 WP_015643966.1 RluA family pseudouridine synthase -
  K750_RS04555 (K750_03280) - 961370..961930 (-) 561 WP_015643965.1 hypothetical protein -
  K750_RS04560 (K750_03275) - 961914..962252 (-) 339 WP_015643964.1 hypothetical protein -
  K750_RS04565 (K750_10015) - 962367..963038 (-) 672 WP_015643963.1 tetratricopeptide repeat protein -
  K750_RS04570 (K750_03260) dprB 963170..963574 (-) 405 WP_015643961.1 Holliday junction resolvase RuvX Machinery gene
  K750_RS04575 (K750_03255) dprA 963571..964371 (-) 801 WP_015643960.1 DNA-processing protein DprA Machinery gene
  K750_RS04580 (K750_03250) minE 964378..964611 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  K750_RS04585 (K750_03245) minD 964608..965414 (-) 807 WP_015643959.1 septum site-determining protein MinD -
  K750_RS04590 (K750_10025) ilvC 965438..966430 (-) 993 WP_015643958.1 ketol-acid reductoisomerase -
  K750_RS04600 (K750_03235) - 966679..967461 (+) 783 WP_015643957.1 NAD+ synthase -
  K750_RS04605 (K750_03230) - 967458..968396 (+) 939 WP_015643956.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15260.77 Da        Isoelectric Point: 9.1637

>NTDB_id=58713 K750_RS04570 WP_015643961.1 963170..963574(-) (dprB) [Helicobacter pylori UM037]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=58713 K750_RS04570 WP_015643961.1 963170..963574(-) (dprB) [Helicobacter pylori UM037]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

98.507

100

0.985

Multiple sequence alignment