Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY98_RS05045 Genome accession   NZ_CP078119
Coordinates   965460..965816 (-) Length   118 a.a.
NCBI ID   WP_277812990.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960460..970816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS05020 (KWY98_05020) pilA 961003..962256 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  KWY98_RS05025 (KWY98_05025) - 962334..962507 (-) 174 WP_218390120.1 hypothetical protein -
  KWY98_RS05030 (KWY98_05030) - 962521..963356 (-) 836 Protein_956 opacity family porin -
  KWY98_RS11580 - 963898..964403 (-) 506 Protein_957 pilin -
  KWY98_RS11930 - 965219..965337 (-) 119 Protein_958 pilin -
  KWY98_RS05045 (KWY98_05045) pilE 965460..965816 (-) 357 WP_277812990.1 pilin Machinery gene
  KWY98_RS11585 - 965841..966224 (-) 384 Protein_960 pilin -
  KWY98_RS05050 (KWY98_05050) lpxC 966369..967292 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY98_RS05055 (KWY98_05055) pilE 967823..968257 (-) 435 WP_218390128.1 pilin Machinery gene
  KWY98_RS05060 (KWY98_05060) - 968353..968769 (-) 417 Protein_963 pilin -
  KWY98_RS05065 (KWY98_05065) - 969229..970173 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12428.00 Da        Isoelectric Point: 8.7280

>NTDB_id=587122 KWY98_RS05045 WP_277812990.1 965460..965816(-) (pilE) [Neisseria gonorrhoeae strain 1291]
MSNTFAVAGYCPNHGIWPENNDKAGVASPSDIKGKYVESVTVAKGVVTAKMLSSGVNKEIQGKKLSLWAKRENGSVKWFC
GQPVTRGAGADTVTDVADTGIDTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 357 bp        

>NTDB_id=587122 KWY98_RS05045 WP_277812990.1 965460..965816(-) (pilE) [Neisseria gonorrhoeae strain 1291]
ATTTCAAATACTTTCGCCGTTGCCGGGTATTGCCCGAATCACGGCATATGGCCGGAAAACAACGACAAGGCCGGCGTGGC
ATCCCCCTCCGACATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCAAAATGCTTTCAA
GCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGC
GGACAGCCGGTTACGCGCGGCGCCGGCGCCGACACCGTTACCGACGTTGCCGACACCGGCATCGACACCAAGCACCTGCC
GTCAACCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.439

96.61

0.729
  pilE Neisseria gonorrhoeae strain FA1090

72.973

94.068

0.686