Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY98_RS05055 Genome accession   NZ_CP078119
Coordinates   967823..968257 (-) Length   144 a.a.
NCBI ID   WP_218390128.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 969229..970173 967823..968257 flank 972


Gene organization within MGE regions


Location: 967823..970173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS05055 (KWY98_05055) pilE 967823..968257 (-) 435 WP_218390128.1 pilin Machinery gene
  KWY98_RS05060 (KWY98_05060) - 968353..968769 (-) 417 Protein_963 pilin -
  KWY98_RS05065 (KWY98_05065) - 969229..970173 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15326.98 Da        Isoelectric Point: 7.1352

>NTDB_id=587123 KWY98_RS05055 WP_218390128.1 967823..968257(-) (pilE) [Neisseria gonorrhoeae strain 1291]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNTSAGVASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEI
QGKRLSLWARRENGSVKWFCGQPVTRAAKDDDAVTADGTDGANGTKIETKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=587123 KWY98_RS05055 WP_218390128.1 967823..968257(-) (pilE) [Neisseria gonorrhoeae strain 1291]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGC
CGCCAAAGACGACGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACGGCACCAAAATCGAAACCAAGCACCTGCCGT
CAACCTGCCGCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.329

99.306

0.708
  pilE Neisseria gonorrhoeae MS11

70.345

100

0.708