Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY96_RS11725 Genome accession   NZ_CP078116
Coordinates   2003287..2003757 (-) Length   156 a.a.
NCBI ID   WP_003701721.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1998287..2008757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS10385 (KWY96_10385) - 1998796..1999671 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  KWY96_RS10395 (KWY96_10395) thiC 2000269..2002170 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  KWY96_RS10400 (KWY96_10400) pilE 2002658..2003074 (-) 417 WP_218422902.1 pilin Machinery gene
  KWY96_RS11725 pilE 2003287..2003757 (-) 471 WP_003701721.1 pilin Machinery gene
  KWY96_RS10410 (KWY96_10410) - 2003796..2004206 (-) 411 Protein_2014 pilin -
  KWY96_RS10415 (KWY96_10415) - 2004698..2005063 (-) 366 Protein_2015 pilin -
  KWY96_RS10420 (KWY96_10420) pilE 2005116..2005541 (-) 426 WP_050161409.1 pilin Machinery gene
  KWY96_RS10425 (KWY96_10425) - 2005593..2005901 (+) 309 Protein_2017 NAD(P)-dependent oxidoreductase -
  KWY96_RS10430 (KWY96_10430) metG 2005976..2008030 (-) 2055 WP_218422969.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17032.54 Da        Isoelectric Point: 9.7744

>NTDB_id=587005 KWY96_RS11725 WP_003701721.1 2003287..2003757(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWAKREDGSVKWFCGQPVKRTGDNDDDVTADKDDKEIDT
KHLPSTCRDASSAVCIETPPTAFYKNTQTVIPTKVGIRNAKSKETVLPDKFLRRSVGIPACAGMTAERFLLLPINS

Nucleotide


Download         Length: 471 bp        

>NTDB_id=587005 KWY96_RS11725 WP_003701721.1 2003287..2003757(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCACCGGCGACAACGACGACGACGTTACCGCCGACAAAGACGACAAAGAAATCGACACC
AAGCACCTGCCGTCAACCTGCCGCGACGCTTCATCTGCCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATAC
CCAAACCGTCATTCCCACAAAAGTGGGAATCCGGAACGCAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCTGCGCC
GATCGGTCGGGATTCCCGCCTGCGCGGGAATGACGGCGGAGCGGTTTCTGTTGCTCCCGATAAATTCCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

80.645

59.615

0.481
  pilE Neisseria gonorrhoeae MS11

71.264

55.769

0.397