Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY96_RS10420 Genome accession   NZ_CP078116
Coordinates   2005116..2005541 (-) Length   141 a.a.
NCBI ID   WP_050161409.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2000116..2010541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS10395 (KWY96_10395) thiC 2000269..2002170 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  KWY96_RS10400 (KWY96_10400) pilE 2002658..2003074 (-) 417 WP_218422902.1 pilin Machinery gene
  KWY96_RS11725 pilE 2003287..2003757 (-) 471 WP_003701721.1 pilin Machinery gene
  KWY96_RS10410 (KWY96_10410) - 2003796..2004206 (-) 411 Protein_2014 pilin -
  KWY96_RS10415 (KWY96_10415) - 2004698..2005063 (-) 366 Protein_2015 pilin -
  KWY96_RS10420 (KWY96_10420) pilE 2005116..2005541 (-) 426 WP_050161409.1 pilin Machinery gene
  KWY96_RS10425 (KWY96_10425) - 2005593..2005901 (+) 309 Protein_2017 NAD(P)-dependent oxidoreductase -
  KWY96_RS10430 (KWY96_10430) metG 2005976..2008030 (-) 2055 WP_218422969.1 methionine--tRNA ligase -
  KWY96_RS10435 (KWY96_10435) glmS 2008146..2009984 (-) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15292.38 Da        Isoelectric Point: 9.6170

>NTDB_id=586997 KWY96_RS10420 WP_050161409.1 2005116..2005541(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=586997 KWY96_RS10420 WP_050161409.1 2005116..2005541(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

78.652

63.121

0.496
  pilE Neisseria gonorrhoeae MS11

69.88

58.865

0.411