Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY96_RS10520 Genome accession   NZ_CP078116
Coordinates   2026558..2026986 (-) Length   142 a.a.
NCBI ID   WP_218422905.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2021558..2031986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS10500 (KWY96_10500) msrAB 2021655..2023223 (-) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  KWY96_RS10505 (KWY96_10505) pilA 2023369..2024622 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  KWY96_RS10510 (KWY96_10510) - 2025204..2025968 (-) 765 Protein_2034 opacity family porin -
  KWY96_RS10515 (KWY96_10515) - 2025896..2026060 (-) 165 WP_218422904.1 hypothetical protein -
  KWY96_RS10520 (KWY96_10520) pilE 2026558..2026986 (-) 429 WP_218422905.1 pilin Machinery gene
  KWY96_RS10525 (KWY96_10525) lpxC 2027092..2028015 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY96_RS11695 - 2028508..2028873 (-) 366 Protein_2038 pilin -
  KWY96_RS11700 - 2028913..2029314 (-) 402 Protein_2039 pilin -
  KWY96_RS10535 (KWY96_10535) - 2029852..2030250 (-) 399 Protein_2040 pilin -
  KWY96_RS11705 - 2030744..2031085 (-) 342 Protein_2041 pilin -
  KWY96_RS10540 (KWY96_10540) - 2031104..2031499 (-) 396 Protein_2042 pilin -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15346.01 Da        Isoelectric Point: 7.7465

>NTDB_id=586999 KWY96_RS10520 WP_218422905.1 2026558..2026986(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYCPNHGKWPENNDKAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
GKRLSLWARRENGSVKWFCGQPVKRDDVAAANDDDVTDDKNNNGIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=586999 KWY96_RS10520 WP_218422905.1 2026558..2026986(-) (pilE) [Neisseria gonorrhoeae strain 88G285]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCAAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CGTTGCCGCCGCCAACGACGACGACGTTACCGACGACAAAAACAACAACGGCATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.75

100

0.697
  pilE Neisseria gonorrhoeae strain FA1090

65.248

99.296

0.648