Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWZ00_RS11070 Genome accession   NZ_CP078115
Coordinates   2107654..2108049 (+) Length   131 a.a.
NCBI ID   WP_256347977.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102654..2113049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS12180 - 2107433..2107552 (+) 120 Protein_2166 competence protein ComE -
  KWZ00_RS11070 (KWZ00_11070) comE 2107654..2108049 (+) 396 WP_256347977.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWZ00_RS11075 (KWZ00_11075) comP 2108137..2108586 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  KWZ00_RS12185 - 2108593..2108847 (-) 255 WP_020996893.1 hypothetical protein -
  KWZ00_RS11085 (KWZ00_11085) - 2108963..2109109 (-) 147 WP_047919164.1 hypothetical protein -
  KWZ00_RS11090 (KWZ00_11090) - 2109496..2110086 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  KWZ00_RS11095 (KWZ00_11095) - 2110125..2110454 (+) 330 WP_002234365.1 DNA cytosine methyltransferase -
  KWZ00_RS12190 - 2110468..2111325 (+) 858 WP_012503917.1 ATP-binding protein -
  KWZ00_RS12195 - 2111515..2112111 (+) 597 WP_012503916.1 TIGR02391 family protein -
  KWZ00_RS11105 (KWZ00_11105) - 2112117..2112539 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13826.63 Da        Isoelectric Point: 10.8790

>NTDB_id=586955 KWZ00_RS11070 WP_256347977.1 2107654..2108049(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPSIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586955 KWZ00_RS11070 WP_256347977.1 2107654..2108049(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGAGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992